RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ASCC2Q9H1I8 757 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-219ENST00000556413 COPRSQ9NQ92 184 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 RAPGEFL1Q9UHV5 662 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 EFEMP2O95967 443 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 INHBBP09529 407 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 CWF19L2Q2TBE0 894 aaKnown RBP6.83□□□□□ -1.32
SCFD1-219ENST00000556413 RNF111Q6ZNA4 994 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 DAGLBQ8NCG7 672 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 SGPP1Q9BX95 441 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 LRRC3Q9BY71 257 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 BRMS1Q9HCU9 246 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 GCM1Q9NP62 436 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 KCNQ5Q9NR82 932 aa6.83□□□□□ -1.32
SCFD1-219ENST00000556413 TEX51A0A1B0GUA7 166 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 RAG1P15918 1043 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 RPL10P27635 214 aaKnown RBP6.82□□□□□ -1.32
SCFD1-219ENST00000556413 RNF4P78317 190 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 MLECQ14165 292 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 TMEM132EQ6IEE7 984 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 TMC3Q7Z5M5 1100 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 NLRX1Q86UT6 975 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 SIRT2Q8IXJ6 389 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 TCTN2Q96GX1 697 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 FOXP3Q9BZS1 431 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 PCDHB14Q9Y5E9 798 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 ROBO2Q9HCK4 1378 aa6.82□□□□□ -1.32
SCFD1-219ENST00000556413 GREM1O60565 184 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 USP2O75604 605 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 ATE1O95260 518 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 PDIA4P13667 645 aaKnown RBP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 EIF4A3P38919 411 aaKnown RBP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 NBPF9Q3BBW0 867 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 NBPF12Q5TAG4 269 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 WAPLQ7Z5K2 1190 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 ZNF655Q8N720 491 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCFD1-219ENST00000556413 GMIPQ9P107 970 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 TCFL5Q9UL49 500 aa6.81□□□□□ -1.32
SCFD1-219ENST00000556413 TMEM82A0PJX8 343 aa6.8□□□□□ -1.32
SCFD1-219ENST00000556413 POLR2BP30876 1174 aaKnown RBP6.8□□□□□ -1.32
SCFD1-219ENST00000556413 SNW1Q13573 536 aaKnown RBP6.8□□□□□ -1.32
SCFD1-219ENST00000556413 CDCP2Q5VXM1 449 aa6.8□□□□□ -1.32
SCFD1-219ENST00000556413 LINC00116Q8NCU8 138 aa6.8□□□□□ -1.32
SCFD1-219ENST00000556413 MAP6Q96JE9 813 aa6.8□□□□□ -1.32
SCFD1-219ENST00000556413 ZMYM5Q9UJ78 669 aa6.8□□□□□ -1.32
SCFD1-219ENST00000556413 SUPT16HQ9Y5B9 1047 aaKnown RBP6.8□□□□□ -1.32
SCFD1-219ENST00000556413 NCANO14594 1321 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 OR14I1A6ND48 311 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 PRRG2O14669 202 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 NRDCO43847 1150 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 KIR2DL1P43626 348 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-219ENST00000556413 KIR2DL2P43627 348 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-219ENST00000556413 CRKP46108 304 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 PCBP3P57721 371 aaKnown RBP6.79□□□□□ -1.32
SCFD1-219ENST00000556413 ADGRF1Q5T601 910 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 OVOS1Q6IE37 1185 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 EHMT1Q9H9B1 1298 aa6.79□□□□□ -1.32
SCFD1-219ENST00000556413 CNOT6Q9ULM6 557 aaKnown RBP6.79□□□□□ -1.32
SCFD1-219ENST00000556413 SSU72P8A0A1W2PR75 194 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 B8ZZF3 427 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 PRAMEF1O95521 474 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 ERCC3P19447 782 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 HOXA5P20719 270 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 ITGAEP38570 1179 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 SLC14A2Q15849 920 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 BBS9Q3SYG4 887 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 ZPBP2Q6X784 338 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 CEP128Q6ZU80 1094 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 ZNF296Q8WUU4 475 aaPredicted RBP6.78□□□□□ -1.32
SCFD1-219ENST00000556413 ATG4CQ96DT6 458 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 HHIPL1Q96JK4 782 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 C20orf173Q96LM9 149 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 KRTAP4-11Q9BYQ6 195 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 CNNM2Q9H8M5 875 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 CRTAC1Q9NQ79 661 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 KCTD3Q9Y597 815 aa6.78□□□□□ -1.32
SCFD1-219ENST00000556413 SYPP08247 313 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 CTSWP56202 376 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 SRSF3P84103 164 aaKnown RBP6.77□□□□□ -1.33
SCFD1-219ENST00000556413 RAD51AP2Q09MP3 1159 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 SSPNQ14714 243 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 ZNF385BQ569K4 471 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 PRDM14Q9GZV8 571 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 MBD1Q9UIS9 605 aaPredicted RBP6.77□□□□□ -1.33
SCFD1-219ENST00000556413 MINPP1Q9UNW1 487 aa6.77□□□□□ -1.33
SCFD1-219ENST00000556413 HRKO00198 91 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 SIGLEC6O43699 453 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 FKTNO75072 461 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 CLCQ05315 142 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 NLRC3Q7RTR2 1065 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 ZNF512BQ96KM6 892 aaPredicted RBP6.76□□□□□ -1.33
SCFD1-219ENST00000556413 PLCD4Q9BRC7 762 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 PARD6AQ9NPB6 346 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 UBP1Q9NZI7 540 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 ADAMTS1Q9UHI8 967 aa6.76□□□□□ -1.33
SCFD1-219ENST00000556413 CLEC3AO75596 197 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 PNLIPP16233 465 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 BMP7P18075 431 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 SDHBP21912 280 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 CCNFP41002 786 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms