RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 NSUN3Q9H649 340 aaKnown RBP8.67□□□□□ -1.02
PRPF39-209ENST00000556353 C19orf44Q9H6X5 657 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 DBX1A6NMT0 343 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 VAMP1P23763 118 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 CHRNEQ04844 493 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 SNW1Q13573 536 aaKnown RBP8.66□□□□□ -1.02
PRPF39-209ENST00000556353 TCTN2Q96GX1 697 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 SLC6A18Q96N87 628 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 MKRN2Q9H000 416 aaKnown RBP8.66□□□□□ -1.02
PRPF39-209ENST00000556353 SP110Q9HB58 689 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 ZNRF3Q9ULT6 936 aa8.66□□□□□ -1.02
PRPF39-209ENST00000556353 SSU72P8A0A1W2PR75 194 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 SCAMP3O14828 347 aaKnown RBP8.65□□□□□ -1.02
PRPF39-209ENST00000556353 RECKO95980 971 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 PCBP3P57721 371 aaKnown RBP8.65□□□□□ -1.02
PRPF39-209ENST00000556353 NR0B2Q15466 257 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 TMEM192Q8IY95 271 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 USHBP1Q8N6Y0 703 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 ANKS4BQ8N8V4 417 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 FBXO15Q8NCQ5 510 aaPredicted RBP8.65□□□□□ -1.02
PRPF39-209ENST00000556353 FERD3LQ96RJ6 166 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 RNF32Q9H0A6 362 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 EPB41L4BQ9H329 900 aa8.65□□□□□ -1.02
PRPF39-209ENST00000556353 ARID1BQ8NFD5 2236 aaPredicted RBP8.65□□□□□ -1.03
PRPF39-209ENST00000556353 SIGLEC6O43699 453 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 PRAMEF1O95521 474 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 RPL10P27635 214 aaKnown RBP8.64□□□□□ -1.03
PRPF39-209ENST00000556353 SYDE1Q6ZW31 735 aaPredicted RBP8.64□□□□□ -1.03
PRPF39-209ENST00000556353 SLC9A7Q96T83 725 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 FOXP3Q9BZS1 431 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 PRDM14Q9GZV8 571 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 DCP1AQ9NPI6 582 aaPredicted RBP8.64□□□□□ -1.03
PRPF39-209ENST00000556353 DDX41Q9UJV9 622 aaKnown RBP8.64□□□□□ -1.03
PRPF39-209ENST00000556353 TCFL5Q9UL49 500 aa8.64□□□□□ -1.03
PRPF39-209ENST00000556353 RACK1P63244 317 aaKnown RBP8.63□□□□□ -1.03
PRPF39-209ENST00000556353 INTS3Q68E01 1043 aaKnown RBP8.63□□□□□ -1.03
PRPF39-209ENST00000556353 WAPLQ7Z5K2 1190 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 LINC01599Q8WXQ3 324 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 DHRS1Q96LJ7 313 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 KRTAP9-9Q9BYP9 154 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 KRTAP9-4Q9BYQ2 154 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 EBF1Q9UH73 591 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 ZMYM5Q9UJ78 669 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 ZNF281Q9Y2X9 895 aa8.63□□□□□ -1.03
PRPF39-209ENST00000556353 TSPAN15O95858 294 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 RAP1GAPP47736 663 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 SNX17Q15036 470 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 TIGD5Q53EQ6 642 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 FBXW10Q5XX13 1052 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 LINC00116Q8NCU8 138 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 SLC6A17Q9H1V8 727 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 CWC22Q9HCG8 908 aaKnown RBP8.62□□□□□ -1.03
PRPF39-209ENST00000556353 CHST7Q9NS84 486 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 GPR160Q9UJ42 338 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 FBXL21Q9UKT6 434 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 PCDHB12Q9Y5F1 795 aa8.62□□□□□ -1.03
PRPF39-209ENST00000556353 FAM86C2PA6NEL3 165 aa8.61□□□□□ -1.03
PRPF39-209ENST00000556353 SYPP08247 313 aa8.61□□□□□ -1.03
PRPF39-209ENST00000556353 ZNF654Q8IZM8 581 aa8.61□□□□□ -1.03
PRPF39-209ENST00000556353 TM9SF2Q99805 663 aa8.61□□□□□ -1.03
PRPF39-209ENST00000556353 G6PC3Q9BUM1 346 aa8.61□□□□□ -1.03
PRPF39-209ENST00000556353 SUCOQ9UBS9 1254 aaKnown RBP8.61□□□□□ -1.03
PRPF39-209ENST00000556353 FKTNO75072 461 aa8.6□□□□□ -1.03
PRPF39-209ENST00000556353 ACRP10323 421 aa8.6□□□□□ -1.03
PRPF39-209ENST00000556353 AUHQ13825 339 aaKnown RBP8.6□□□□□ -1.03
PRPF39-209ENST00000556353 TAB3Q8N5C8 712 aaPredicted RBP8.6□□□□□ -1.03
PRPF39-209ENST00000556353 GFOD1Q9NXC2 390 aa8.6□□□□□ -1.03
PRPF39-209ENST00000556353 PPT2Q9UMR5 302 aa8.6□□□□□ -1.03
PRPF39-209ENST00000556353 NFIBO00712 420 aa8.59□□□□□ -1.03
PRPF39-209ENST00000556353 BBS9Q3SYG4 887 aa8.59□□□□□ -1.03
PRPF39-209ENST00000556353 IRF2BP1Q8IU81 584 aa8.59□□□□□ -1.03
PRPF39-209ENST00000556353 MAP6Q96JE9 813 aa8.59□□□□□ -1.03
PRPF39-209ENST00000556353 MINPP1Q9UNW1 487 aa8.59□□□□□ -1.03
PRPF39-209ENST00000556353 YBX2Q9Y2T7 364 aaKnown RBP8.59□□□□□ -1.03
PRPF39-209ENST00000556353 TMEM82A0PJX8 343 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 MEIS1O00470 390 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 PSPNO60542 156 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 USP2O75604 605 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 TMEM253P0C7T8 217 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 KIR2DL1P43626 348 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 KIR2DL2P43627 348 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 TRIM26Q12899 539 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 PAK2Q13177 524 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 COL9A2Q14055 689 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 SLC14A2Q15849 920 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 CCDC144CPQ8IYA2 1237 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 RBBP8NLQ8NC74 664 aaPredicted RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 MRRFQ96E11 262 aaKnown RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 INTS4Q96HW7 963 aaKnown RBP8.58□□□□□ -1.04
PRPF39-209ENST00000556353 SPATA32Q96LK8 384 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 SLC26A8Q96RN1 970 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 KCNK12Q9HB15 430 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 PRR13Q9NZ81 148 aa8.58□□□□□ -1.04
PRPF39-209ENST00000556353 ENDOUP21128 410 aaKnown RBP8.57□□□□□ -1.04
PRPF39-209ENST00000556353 PMS1P54277 932 aaKnown RBP8.57□□□□□ -1.04
PRPF39-209ENST00000556353 CEP128Q6ZU80 1094 aa8.57□□□□□ -1.04
PRPF39-209ENST00000556353 METTL16Q86W50 562 aaKnown RBP8.57□□□□□ -1.04
PRPF39-209ENST00000556353 ANKLE2Q86XL3 938 aa8.57□□□□□ -1.04
PRPF39-209ENST00000556353 C7orf61Q8IZ16 206 aa8.57□□□□□ -1.04
PRPF39-209ENST00000556353 SMARCC1Q92922 1105 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms