RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 TAOK2Q9UL54 1235 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 CSADQ9Y600 493 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 NID2Q14112 1375 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 SNHG28P0DPA3 235 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 HUNKP57058 714 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 GRM4Q14833 912 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 SYNE3Q6ZMZ3 975 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 C2orf69Q8N8R5 385 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 ZNF280CQ8ND82 737 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 AIFM3Q96NN9 605 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 WDR18Q9BV38 432 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 GJB4Q9NTQ9 266 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.54□□□□□ -0.4
TDP1-211ENST00000555178 PALM3A6NDB9 673 aaPredicted RBP12.54□□□□□ -0.4
TDP1-211ENST00000555178 SPDYE5A6NIY4 337 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 PEX10O60683 326 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 FDPSP14324 419 aaKnown RBP12.54□□□□□ -0.4
TDP1-211ENST00000555178 MOGSQ13724 837 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 FAM83BQ5T0W9 1011 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 FOXD4L5Q5VV16 416 aaPredicted RBP12.54□□□□□ -0.4
TDP1-211ENST00000555178 SAPCD2Q86UD0 394 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 SMARCC2Q8TAQ2 1214 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 FOXD4L4Q8WXT5 416 aaPredicted RBP12.54□□□□□ -0.4
TDP1-211ENST00000555178 SHISA4Q96DD7 197 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 ZIC5Q96T25 663 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 VCPKMTQ9H867 229 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 ARHGEF10LQ9HCE6 1279 aa12.54□□□□□ -0.4
TDP1-211ENST00000555178 DDAH1O94760 285 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 NT5C2P49902 561 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 BACE1P56817 501 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 ZNF543Q08ER8 600 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 TREML2Q5T2D2 321 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 SLC10A4Q96EP9 437 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 FEZ1Q99689 392 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 USP17L10C9JJH3 530 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 CPLX1O14810 134 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 CCDC178Q5BJE1 867 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 POTEEQ6S8J3 1075 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 ERO1BQ86YB8 467 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 GMCL1P1Q8NEA9 526 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 WNK4Q96J92 1243 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 KIAA1683Q9H0B3 1180 aa12.53□□□□□ -0.4
TDP1-211ENST00000555178 KLRF2D3W0D1 207 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 CCDC96Q2M329 555 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
TDP1-211ENST00000555178 TMTC3Q6ZXV5 915 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 VAT1LQ9HCJ6 419 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 ZDHHC9Q9Y397 364 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 CNTNAP5Q8WYK1 1306 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 ADAMTS3O15072 1205 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 VCAM1P19320 739 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 SYT1P21579 422 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 SLC26A6Q9BXS9 759 aa12.52□□□□□ -0.41
TDP1-211ENST00000555178 ISY1Q9ULR0 285 aaKnown RBP12.52□□□□□ -0.41
TDP1-211ENST00000555178 TMEM232C9JQI7 657 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 PARP1P09874 1014 aaKnown RBP12.51□□□□□ -0.41
TDP1-211ENST00000555178 SLC1A4P43007 532 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 PPATQ06203 517 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 RASAL3Q86YV0 1011 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 CTCFLQ8NI51 663 aaPredicted RBP12.51□□□□□ -0.41
TDP1-211ENST00000555178 CHAMP1Q96JM3 812 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 MS4A4AQ96JQ5 239 aa12.51□□□□□ -0.41
TDP1-211ENST00000555178 LLPHQ9BRT6 129 aaKnown RBP12.51□□□□□ -0.41
TDP1-211ENST00000555178 CWC22Q9HCG8 908 aaKnown RBP12.51□□□□□ -0.41
TDP1-211ENST00000555178 BMP3P12645 472 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 RCAN1P53805 252 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 FKBP1BP68106 108 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 PPIL2Q13356 520 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 OTUD7BQ6GQQ9 843 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 GMCL1Q96IK5 515 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 GINM1Q9NU53 330 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 CHMP5Q9NZZ3 219 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 ORC3Q9UBD5 711 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 KCNH4Q9UQ05 1017 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 TLL2Q9Y6L7 1015 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 FAM155AB1AL88 458 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 DHX16O60231 1041 aaKnown RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 PPP1R11O60927 126 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 CALM1P0DP23 149 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 CALM2P0DP24 149 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 CALM3P0DP25 149 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 IFNAR1P17181 557 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 ZNF157P51786 506 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 GUCY1B3Q02153 619 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 PKN1Q16512 942 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 SPRYD7Q5W111 196 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 GADL1Q6ZQY3 521 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 PTPN18Q99952 460 aa12.5□□□□□ -0.41
TDP1-211ENST00000555178 RPAP3Q9H6T3 665 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 ABT1Q9ULW3 272 aaKnown RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 V9GY48 417 aaPredicted RBP12.5□□□□□ -0.41
TDP1-211ENST00000555178 A0A0G2JLL6 359 aaPredicted RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 TMEM88BA6NKF7 163 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 FSTL1Q12841 308 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 GRM1Q13255 1194 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 SH3D19Q5HYK7 790 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 CYP4F22Q6NT55 531 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 GPAT2Q6NUI2 795 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 PRRT2Q7Z6L0 340 aaPredicted RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 ADGRF4Q8IZF3 695 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms