RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 Q3C1V9 767 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 GPRC5AQ8NFJ5 357 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 TTC14Q96N46 770 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 TMEM47Q9BQJ4 181 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 ZKSCAN3Q9BRR0 538 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 PAGR1Q9BTK6 254 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 E7EWF7 191 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 GNRH1P01148 92 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 FCGRTP55899 365 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 FBXO46Q6PJ61 603 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-217ENST00000555116 ATG4CQ96DT6 458 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 BTBD7Q9P203 1132 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 ADAMTS5Q9UNA0 930 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 PTPN22Q9Y2R2 807 aa16.74■□□□□ 0.27
SHMT2-217ENST00000555116 SLC27A2O14975 620 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 FMNL1O95466 1100 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-217ENST00000555116 CREB3L3Q68CJ9 461 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 CYB5R4Q7L1T6 521 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 ANKS1AQ92625 1134 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 GMCL1Q96IK5 515 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 PPP1R9AQ9ULJ8 1098 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 CCDC178Q5BJE1 867 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 RASGRP2Q7LDG7 609 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 IQCA1Q86XH1 822 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 ZSCAN10Q96SZ4 725 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-217ENST00000555116 SRRDQ9UH36 339 aa16.73■□□□□ 0.27
SHMT2-217ENST00000555116 BMP3P12645 472 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 MCCP23508 829 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 TRDNQ13061 729 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 DGKHQ86XP1 1220 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 MB21D1Q8N884 522 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 PORCNQ9H237 461 aa16.72■□□□□ 0.27
SHMT2-217ENST00000555116 ZNFX1Q9P2E3 1918 aaKnown RBP16.72■□□□□ 0.27
SHMT2-217ENST00000555116 TNPO2O14787 897 aaKnown RBP16.71■□□□□ 0.27
SHMT2-217ENST00000555116 HOXD10P28358 340 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 ENAHQ8N8S7 591 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-217ENST00000555116 NCOA7Q8NI08 942 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 ABHD8Q96I13 439 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 SLF1Q9BQI6 1058 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 SLC1A4P43007 532 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 PRMT2P55345 433 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 SAMD1Q6SPF0 538 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-217ENST00000555116 MB21D2Q8IYB1 491 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-217ENST00000555116 DCAF4Q8WV16 495 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 CHMP4CQ96CF2 233 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 FEM1BQ9UK73 627 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 GABRQQ9UN88 632 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 HPS5Q9UPZ3 1129 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 PTCH2Q9Y6C5 1203 aa16.71■□□□□ 0.27
SHMT2-217ENST00000555116 TNKSO95271 1327 aa16.71■□□□□ 0.26
SHMT2-217ENST00000555116 VWA5AO00534 786 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 PRKCZQ05513 592 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 SEC23AQ15436 765 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 RALYLQ86SE5 291 aaKnown RBP16.7■□□□□ 0.26
SHMT2-217ENST00000555116 REPS2Q8NFH8 660 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 UBAC1Q9BSL1 405 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 MTMR7Q9Y216 660 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 SMCHD1A6NHR9 2005 aa16.7■□□□□ 0.26
SHMT2-217ENST00000555116 TMEM232C9JQI7 657 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 PLA2G6O60733 806 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 MAPK4P31152 587 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 ANTXR2P58335 489 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 CCNA1P78396 465 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 TMEM132BQ14DG7 1078 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 KCTD1Q719H9 257 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 PRPF38AQ8NAV1 312 aaKnown RBP16.69■□□□□ 0.26
SHMT2-217ENST00000555116 COA7Q96BR5 231 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 SPATC1LQ9H0A9 340 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 SNHG28P0DPA3 235 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 PDHBP11177 359 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 COL9A3Q14050 684 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-217ENST00000555116 MOV10L1Q9BXT6 1211 aaKnown RBP16.69■□□□□ 0.26
SHMT2-217ENST00000555116 GJD2Q9UKL4 321 aa16.69■□□□□ 0.26
SHMT2-217ENST00000555116 REC8O95072 547 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 FLT3LGP49771 235 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 RNF20Q5VTR2 975 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 FAM160B2Q86V87 743 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 RASEFQ8IZ41 740 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 PNMA1Q8ND90 353 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 KIFC2Q96AC6 838 aa16.68■□□□□ 0.26
SHMT2-217ENST00000555116 ZNF214Q9UL59 606 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-217ENST00000555116 STAT2P52630 851 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 CCDC96Q2M329 555 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 TSGA10IPQ3SY00 556 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 TTBK2Q6IQ55 1244 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 CHST3Q7LGC8 479 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 GPR142Q7Z601 462 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 PLEKHH3Q7Z736 793 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 SHCBP1Q8NEM2 672 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 CHURC1Q8WUH1 139 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 KCNB2Q92953 911 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 KAT14Q9H8E8 782 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 ISY1Q9ULR0 285 aaKnown RBP16.67■□□□□ 0.26
SHMT2-217ENST00000555116 HTTP42858 3142 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 ZNF543Q08ER8 600 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 PLS1Q14651 629 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 IFIT1BQ5T764 474 aaKnown RBP16.67■□□□□ 0.26
SHMT2-217ENST00000555116 BTNL9Q6UXG8 535 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 CCAR1Q8IX12 1150 aaKnown RBP16.67■□□□□ 0.26
SHMT2-217ENST00000555116 SLC38A10Q9HBR0 1119 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms