RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SDSP20132 328 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 NOVP48745 357 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 ATP2B2Q01814 1243 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 NMIQ13287 307 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 ABRAQ8N0Z2 381 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 CEP95Q96GE4 821 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 MOV10L1Q9BXT6 1211 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 MROH8Q9H579 483 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 PPP1R9AQ9ULJ8 1098 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 MYH4Q9Y623 1939 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 F5H6K3 240 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 PRDM1O75626 825 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 NDUFB10O96000 172 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 IGHA2P01877 340 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 TSPY3P0CV98 308 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 TSPY8P0CW00 308 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 HSPD1P10809 573 aaKnown RBP19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 PCP11498 1178 aaKnown RBP19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 ZKSCAN1P17029 563 aaPredicted RBP19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 NT5C2P49902 561 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 KLRC3Q07444 240 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 ZNF589Q86UQ0 364 aaPredicted RBP19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 ATG4CQ96DT6 458 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 IVNS1ABPQ9Y6Y0 642 aa19.06■□□□□ 0.64
CCDC88C-209ENST00000554872 SLC25A27O95847 323 aa19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 FGAP02671 866 aa19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 CYP2B6P20813 491 aa19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 COPB2P35606 906 aa19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 RILPL2Q969X0 211 aa19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 CWC22Q9HCG8 908 aaKnown RBP19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 HMX1Q9NP08 348 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-209ENST00000554872 VWA5AO00534 786 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 ATP2A1O14983 1001 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 TFAP4Q01664 338 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 FAM83BQ5T0W9 1011 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 RIOX2Q8IUF8 465 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 STK11IPQ8N1F8 1099 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 ANKLE1Q8NAG6 615 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 REPS2Q8NFH8 660 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 FBXO28Q9NVF7 368 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 CLIP2Q9UDT6 1046 aa19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 ZNF214Q9UL59 606 aaPredicted RBP19.04■□□□□ 0.64
CCDC88C-209ENST00000554872 ERCC3P19447 782 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 PDE4AP27815 886 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 TMEM132BQ14DG7 1078 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 GMCL1Q96IK5 515 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 DEFB118Q96PH6 123 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 SLF1Q9BQI6 1058 aa19.03■□□□□ 0.64
CCDC88C-209ENST00000554872 COL11A1P12107 1806 aaPredicted RBP19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 LAMA4Q16363 1823 aa19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 PRKAR2AP13861 404 aaKnown RBP19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 OLFML2BQ68BL8 750 aa19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 PRPF38AQ8NAV1 312 aaKnown RBP19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 DIAPH3Q9NSV4 1193 aa19.02■□□□□ 0.64
CCDC88C-209ENST00000554872 TSPY2A6NKD2 308 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 PLA2G6O60733 806 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 FARP2O94887 1054 aaPredicted RBP19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 FDX1P10109 184 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 ADORA2AP29274 412 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 CTDSPL2Q05D32 466 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 TRIM32Q13049 653 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 CCL14Q16627 93 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 FAM47AQ5JRC9 791 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 TTC22Q5TAA0 569 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 IL17RBQ9NRM6 502 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 TCP11L1Q9NUJ3 509 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 FEM1BQ9UK73 627 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 OGDHLQ9ULD0 1010 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 TACC3Q9Y6A5 838 aa19.01■□□□□ 0.63
CCDC88C-209ENST00000554872 CACNB2Q08289 660 aaPredicted RBP19■□□□□ 0.63
CCDC88C-209ENST00000554872 WDR78Q5VTH9 848 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 MFSD14CQ5VZR4 134 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 STAG1Q8WVM7 1258 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 DSCC1Q9BVC3 393 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 TEX13BQ9BXU2 312 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 SLC5A4Q9NY91 659 aa19■□□□□ 0.63
CCDC88C-209ENST00000554872 GSPT1P15170 499 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 STAT3P40763 770 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 OAZ1P54368 228 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 LRRC47Q8N1G4 583 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 NPLOC4Q8TAT6 608 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 NUP88Q99567 741 aaPredicted RBP18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 HTATIP2Q9BUP3 242 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 NBPF3Q9H094 633 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 RNF41Q9H4P4 317 aaPredicted RBP18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 SLC38A10Q9HBR0 1119 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 FLRT1Q9NZU1 646 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 RAD50Q92878 1312 aa18.99■□□□□ 0.63
CCDC88C-209ENST00000554872 RANBP6O60518 1105 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 TFRCP02786 760 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 FCER1AP12319 257 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 BMP3P12645 472 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 IRX6P78412 446 aaPredicted RBP18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 PLS1Q14651 629 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 AKNAD1Q5T1N1 836 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 SLFN13Q68D06 897 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 CWC27Q6UX04 472 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 FAM160B2Q86V87 743 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms