RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 TRIM43Q96BQ3 446 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-204ENST00000554660 SEMA6BQ9H3T3 888 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 CYP2D6P10635 497 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 FOSL2P15408 326 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 SLC4A3P48751 1232 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 LRRC41Q15345 812 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 NCAPG2Q86XI2 1143 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 SPICE1Q8N0Z3 855 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 SHCBP1Q8NEM2 672 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 SNX21Q969T3 373 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 ATG4CQ96DT6 458 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 MCM9Q9NXL9 1143 aa13.68□□□□□ -0.22
VPS33B-204ENST00000554660 PARP14Q460N5 1801 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 MAGEB6P1A0A0J9YX57 407 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 STRNO43815 780 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 FLOT1O75955 427 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 ITGB8P26012 769 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 SMAD3P84022 425 aaKnown RBP13.67□□□□□ -0.22
VPS33B-204ENST00000554660 AACSQ86V21 672 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 SDR42E1Q8WUS8 393 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 MAML3Q96JK9 1138 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 C22orf23Q9BZE7 217 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 HOXC10Q9NYD6 342 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 EXOC6BQ9Y2D4 811 aa13.67□□□□□ -0.22
VPS33B-204ENST00000554660 PDE6AP16499 860 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 DSG3P32926 999 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 EPHB4P54760 987 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 TLE2Q04725 743 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 CHD1LQ86WJ1 897 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 LCORLQ8N3X6 602 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 LENG1Q96BZ8 264 aaPredicted RBP13.66□□□□□ -0.22
VPS33B-204ENST00000554660 DYNLL2Q96FJ2 89 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 RNPC3Q96LT9 517 aaKnown RBP13.66□□□□□ -0.22
VPS33B-204ENST00000554660 CRNKL1Q9BZJ0 848 aaKnown RBP13.66□□□□□ -0.22
VPS33B-204ENST00000554660 XPNPEP3Q9NQH7 507 aa13.66□□□□□ -0.22
VPS33B-204ENST00000554660 PGK1P00558 417 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 PGK2P07205 417 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 ICA1Q05084 483 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 SLC9C2Q5TAH2 1124 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 C1orf53Q5VUE5 145 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 TMEM179Q6ZVK1 233 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 MB21D1Q8N884 522 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 MROH8Q9H579 483 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 IL1RAPL2Q9NP60 686 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 SLC5A4Q9NY91 659 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 CIZ1Q9ULV3 898 aaPredicted RBP13.65□□□□□ -0.22
VPS33B-204ENST00000554660 PHF24Q9UPV7 400 aa13.65□□□□□ -0.22
VPS33B-204ENST00000554660 ZNF532Q9HCE3 1301 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 COL11A1P12107 1806 aaPredicted RBP13.64□□□□□ -0.23
VPS33B-204ENST00000554660 MYH8P13535 1937 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 MUC3AQ02505 3323 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 SMIM22K7EJ46 135 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 PQBP1O60828 265 aaKnown RBP13.64□□□□□ -0.23
VPS33B-204ENST00000554660 CLTBP09497 229 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 RARBP10826 455 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 FCER1AP12319 257 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 AKR1B1P15121 316 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 TMEM132BQ14DG7 1078 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 CEP85Q6P2H3 762 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 SIAH1Q8IUQ4 282 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 ABRAQ8N0Z2 381 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 DNAJC2Q99543 621 aaKnown RBP13.64□□□□□ -0.23
VPS33B-204ENST00000554660 ARHGEF10LQ9HCE6 1279 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 DCP1AQ9NPI6 582 aaPredicted RBP13.64□□□□□ -0.23
VPS33B-204ENST00000554660 CHMP5Q9NZZ3 219 aa13.64□□□□□ -0.23
VPS33B-204ENST00000554660 ROBO3Q96MS0 1386 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 A0A1W2PQ45 241 aaPredicted RBP13.63□□□□□ -0.23
VPS33B-204ENST00000554660 A0A1W2PQY0 241 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 TCRBV5S4A2TA0A5A2 114 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 GOLIM4O00461 696 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 TAL1P17542 331 aaPredicted RBP13.63□□□□□ -0.23
VPS33B-204ENST00000554660 PTMSP20962 102 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 TMED8Q6PL24 325 aaPredicted RBP13.63□□□□□ -0.23
VPS33B-204ENST00000554660 USP38Q8NB14 1042 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 MMP19Q99542 508 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 VCPKMTQ9H867 229 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 ARMT1Q9H993 441 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 FBXO28Q9NVF7 368 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 ISY1Q9ULR0 285 aaKnown RBP13.63□□□□□ -0.23
VPS33B-204ENST00000554660 TMX2Q9Y320 296 aa13.63□□□□□ -0.23
VPS33B-204ENST00000554660 PLXNA1Q9UIW2 1896 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 CYP2D7A0A087X1C5 515 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 WDR46O15213 610 aaKnown RBP13.62□□□□□ -0.23
VPS33B-204ENST00000554660 PRKAB2O43741 272 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 RAG1P15918 1043 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 FPGSQ05932 587 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 TTF1Q15361 905 aaPredicted RBP13.62□□□□□ -0.23
VPS33B-204ENST00000554660 SLFNL1Q499Z3 407 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 L1TD1Q5T7N2 865 aaKnown RBP13.62□□□□□ -0.23
VPS33B-204ENST00000554660 RNF180Q86T96 592 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 PRDM6Q9NQX0 595 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 SWAP70Q9UH65 585 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 TACC3Q9Y6A5 838 aa13.62□□□□□ -0.23
VPS33B-204ENST00000554660 BAZ2AQ9UIF9 1905 aaKnown RBP13.61□□□□□ -0.23
VPS33B-204ENST00000554660 TMEM265A0A087WTH1 108 aa13.61□□□□□ -0.23
VPS33B-204ENST00000554660 KIAA0355O15063 1070 aa13.61□□□□□ -0.23
VPS33B-204ENST00000554660 SLC25A27O95847 323 aa13.61□□□□□ -0.23
VPS33B-204ENST00000554660 DNAJB2P25686 324 aa13.61□□□□□ -0.23
VPS33B-204ENST00000554660 KCTD2Q14681 263 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms