RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 RNF26Q9BY78 433 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-210ENST00000553950 ISY1Q9ULR0 285 aaKnown RBP16.85■□□□□ 0.29
SHMT2-210ENST00000553950 FZD1Q9UP38 647 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 AFG3L2Q9Y4W6 797 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 A0A1W2PRG0 241 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 PTPDC1A2A3K4 754 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 TRIM75PA6NK02 468 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 UBE2Q2LH0YL09 131 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 ZBTB48P10074 688 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-210ENST00000553950 PDCP20941 246 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 SPP2Q13103 211 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 SH3D19Q5HYK7 790 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 FAM160B2Q86V87 743 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 PROCA1Q8NCQ7 364 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-210ENST00000553950 ACER1Q8TDN7 264 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 OPTNQ96CV9 577 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 OTUD5Q96G74 571 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 NCOA5Q9HCD5 579 aaKnown RBP16.84■□□□□ 0.29
SHMT2-210ENST00000553950 MAD2L2Q9UI95 211 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 KCNH4Q9UQ05 1017 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 MTMR7Q9Y216 660 aa16.84■□□□□ 0.29
SHMT2-210ENST00000553950 KLRF2D3W0D1 207 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 PLA2G6O60733 806 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 STAT2P52630 851 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 HUNKP57058 714 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 SSRP1Q08945 709 aaKnown RBP16.83■□□□□ 0.28
SHMT2-210ENST00000553950 RAB11FIP4Q86YS3 637 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 FAM184AQ8NB25 1140 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 NSUN7Q8NE18 718 aaKnown RBP16.83■□□□□ 0.28
SHMT2-210ENST00000553950 SMARCC2Q8TAQ2 1214 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 CHURC1Q8WUH1 139 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 CNTNAP5Q8WYK1 1306 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 HHIPL1Q96JK4 782 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 CLMNQ96JQ2 1002 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-210ENST00000553950 SEC63Q9UGP8 760 aaKnown RBP16.83■□□□□ 0.28
SHMT2-210ENST00000553950 FEM1BQ9UK73 627 aa16.83■□□□□ 0.28
SHMT2-210ENST00000553950 RBBP6Q7Z6E9 1792 aaKnown RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 TMEM88BA6NKF7 163 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 hCG_1984214I3L0E3 225 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 DEXIO95424 95 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 FMNL1O95466 1100 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 XBP1P17861 261 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 CDC27P30260 824 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 ST3GAL1Q11201 340 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 TRAF1Q13077 416 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 IKQ13123 557 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 PABPC4Q13310 644 aaKnown RBP eCLIP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 SNAPC2Q13487 334 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 ZYXQ15942 572 aaKnown RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 CST9Q5W186 159 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 MOB2Q70IA6 237 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 FASTKD5Q7L8L6 764 aaKnown RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 CCDC84Q86UT8 332 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 FAM177A1Q8N128 213 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 ZNF713Q8N859 430 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 RGS22Q8NE09 1264 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 FAM217BQ9NTX9 383 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-210ENST00000553950 PNMA2Q9UL42 364 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 A0A0G2JMZ2 1700 aa16.82■□□□□ 0.28
SHMT2-210ENST00000553950 FRMPD2Q68DX3 1309 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-210ENST00000553950 MYPNQ86TC9 1320 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 A0A0G2JLL6 359 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-210ENST00000553950 FDX1P10109 184 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 VCAM1P19320 739 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 ADD1P35611 737 aaKnown RBP16.81■□□□□ 0.28
SHMT2-210ENST00000553950 HMGCS2P54868 508 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 NTRK3Q16288 839 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 PRRT2Q7Z6L0 340 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-210ENST00000553950 RRP36Q96EU6 259 aaKnown RBP16.81■□□□□ 0.28
SHMT2-210ENST00000553950 WNK4Q96J92 1243 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 TLL2Q9Y6L7 1015 aa16.81■□□□□ 0.28
SHMT2-210ENST00000553950 BAZ2BQ9UIF8 2168 aaKnown RBP16.8■□□□□ 0.28
SHMT2-210ENST00000553950 IRF6O14896 467 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 PLEKHA8P1O95397 391 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 GJB2P29033 226 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 GTF2A2P52657 109 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 FMR1Q06787 632 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHMT2-210ENST00000553950 FAM83BQ5T0W9 1011 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 BTNL9Q6UXG8 535 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 SAPCD2Q86UD0 394 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 SPICE1Q8N0Z3 855 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 SLC26A6Q9BXS9 759 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 TANGO6Q9C0B7 1094 aa16.8■□□□□ 0.28
SHMT2-210ENST00000553950 ORC3Q9UBD5 711 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-210ENST00000553950 CIZ1Q9ULV3 898 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-210ENST00000553950 RLFQ13129 1914 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 PRPF3O43395 683 aaKnown RBP16.79■□□□□ 0.28
SHMT2-210ENST00000553950 CTDNEP1O95476 244 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 GOLGA8HP0CJ92 632 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 CETPP11597 493 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 TRIM29Q14134 588 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 SYDE2Q5VT97 1194 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 KCTD1Q719H9 257 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 STAG2Q8N3U4 1231 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 RPAP3Q9H6T3 665 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-210ENST00000553950 RIOX1Q9H6W3 641 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 GPCPD1Q9NPB8 672 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 EMILIN3Q9NT22 766 aa16.79■□□□□ 0.28
SHMT2-210ENST00000553950 ABT1Q9ULW3 272 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms