RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 CDC42EP5Q6NZY7 148 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 NCOA7Q8NI08 942 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 UHRF1Q96T88 793 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-208ENST00000553868 CNNM2Q9H8M5 875 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 DCP1AQ9NPI6 582 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-208ENST00000553868 ANAPC4Q9UJX5 808 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 ATRNL1Q5VV63 1379 aa17.02■□□□□ 0.31
SHMT2-208ENST00000553868 FRMPD3Q5JV73 1810 aa17.01■□□□□ 0.31
SHMT2-208ENST00000553868 NT5C2P49902 561 aa17.01■□□□□ 0.31
SHMT2-208ENST00000553868 NECAB3Q96P71 396 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-208ENST00000553868 ASB2Q96Q27 587 aa17.01■□□□□ 0.31
SHMT2-208ENST00000553868 PRKAG2Q9UGJ0 569 aa17.01■□□□□ 0.31
SHMT2-208ENST00000553868 MYH2Q9UKX2 1941 aa17.01■□□□□ 0.31
SHMT2-208ENST00000553868 SYNGAP1Q96PV0 1343 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 RHBDL3P58872 404 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 RTP1P59025 263 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 PPARAQ07869 468 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 CCL14Q16627 93 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 DHX32Q7L7V1 743 aaKnown RBP17■□□□□ 0.31
SHMT2-208ENST00000553868 BADQ92934 168 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 TTC14Q96N46 770 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 KRT23Q9C075 422 aa17■□□□□ 0.31
SHMT2-208ENST00000553868 ALDH8A1Q9H2A2 487 aaPredicted RBP17■□□□□ 0.31
SHMT2-208ENST00000553868 WDR19Q8NEZ3 1342 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 LAMA4Q16363 1823 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 MINDY4BA8MYZ0 360 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 USP17L12C9JPN9 530 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 USP17L21D6R901 530 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 FGD1P98174 961 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 AKNAD1Q5T1N1 836 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 CTR9Q6PD62 1173 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 MFSD6Q6ZSS7 791 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 STOX1Q6ZVD7 989 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 TGFBRAP1Q8WUH2 860 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 STAG1Q8WVM7 1258 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 PRDM5Q9NQX1 630 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-208ENST00000553868 USP40Q9NVE5 1235 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 MCM9Q9NXL9 1143 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 PNMA3Q9UL41 463 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 ATP11BQ9Y2G3 1177 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 TAF6LQ9Y6J9 622 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 DOCK1Q14185 1865 aa16.99■□□□□ 0.31
SHMT2-208ENST00000553868 HSP90AA1P07900 732 aaKnown RBP16.98■□□□□ 0.31
SHMT2-208ENST00000553868 MCM5P33992 734 aa16.98■□□□□ 0.31
SHMT2-208ENST00000553868 TBC1D10CQ8IV04 446 aa16.98■□□□□ 0.31
SHMT2-208ENST00000553868 ATXN2LQ8WWM7 1075 aaKnown RBP16.98■□□□□ 0.31
SHMT2-208ENST00000553868 ZSCAN31Q96LW9 406 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-208ENST00000553868 TCF20Q9UGU0 1960 aaKnown RBP16.98■□□□□ 0.31
SHMT2-208ENST00000553868 XIRP2A4UGR9 3374 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 PIEZO1Q92508 2521 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 POLR3DP05423 398 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-208ENST00000553868 GCLCP48506 637 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-208ENST00000553868 AK2P54819 239 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 POTEEQ6S8J3 1075 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 SH3BP5LQ7L8J4 393 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 ZNF287Q9HBT7 754 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 LIMCH1Q9UPQ0 1083 aa16.97■□□□□ 0.31
SHMT2-208ENST00000553868 FLT1P17948 1338 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 NPM3O75607 178 aaKnown RBP16.96■□□□□ 0.31
SHMT2-208ENST00000553868 CD2BP2O95400 341 aaKnown RBP16.96■□□□□ 0.31
SHMT2-208ENST00000553868 CPA1P15085 419 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 CTDSPL2Q05D32 466 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 PDE4BQ07343 736 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 MAPKAPK5Q8IW41 473 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 NUDT12Q9BQG2 462 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 ASCC2Q9H1I8 757 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-208ENST00000553868 SH2B1Q9NRF2 756 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-208ENST00000553868 TOMM22Q9NS69 142 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 THEGQ9P2T0 379 aa16.96■□□□□ 0.31
SHMT2-208ENST00000553868 XRCC5P13010 732 aaKnown RBP16.95■□□□□ 0.3
SHMT2-208ENST00000553868 EPHB4P54760 987 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 EXOSC10Q01780 885 aaKnown RBP16.95■□□□□ 0.3
SHMT2-208ENST00000553868 SART3Q15020 963 aaKnown RBP16.95■□□□□ 0.3
SHMT2-208ENST00000553868 C12orf60Q5U649 245 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 SH3RF1Q7Z6J0 888 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 TTC6Q86TZ1 520 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 MB21D2Q8IYB1 491 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-208ENST00000553868 FBXL16Q8N461 479 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 ESR2Q92731 530 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 CHMP4CQ96CF2 233 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 MTA3Q9BTC8 594 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 MYO9BQ13459 2157 aa16.95■□□□□ 0.3
SHMT2-208ENST00000553868 LOC285556D6RIA3 1793 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 ROBO3Q96MS0 1386 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 PRC1O43663 620 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 SLC4A3P48751 1232 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 HMGCS2P54868 508 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 SPP2Q13103 211 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 CCDC85BQ15834 202 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-208ENST00000553868 ALYREFQ86V81 257 aaKnown RBP16.94■□□□□ 0.3
SHMT2-208ENST00000553868 TMX3Q96JJ7 454 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 TMEM87BQ96K49 555 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 RNPC3Q96LT9 517 aaKnown RBP16.94■□□□□ 0.3
SHMT2-208ENST00000553868 LRFN3Q9BTN0 628 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 C1QTNF1Q9BXJ1 281 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 IDI2Q9BXS1 227 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 TXNRD2Q9NNW7 524 aa16.94■□□□□ 0.3
SHMT2-208ENST00000553868 NAV1Q8NEY1 1877 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 TRIM43BA6NCK2 446 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 DDTLA6NHG4 134 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms