RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 ATG4CQ96DT6 458 aa6.91□□□□□ -1.3
SCFD1-210ENST00000553693 BACH2Q9BYV9 841 aa6.91□□□□□ -1.3
SCFD1-210ENST00000553693 SHISA3A0PJX4 238 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 FITM1A5D6W6 292 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 ZGLP1P0C6A0 271 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 IMPDH2P12268 514 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 NBPF12Q5TAG4 269 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-210ENST00000553693 LILRA2Q8N149 483 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 SYTL5Q8TDW5 730 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-210ENST00000553693 TOX2Q96NM4 488 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 PPP1R16BQ96T49 567 aa6.9□□□□□ -1.3
SCFD1-210ENST00000553693 VAMP1P23763 118 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 POLR2BP30876 1174 aaKnown RBP6.89□□□□□ -1.31
SCFD1-210ENST00000553693 CHRNEQ04844 493 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 RNF111Q6ZNA4 994 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 DAGLBQ8NCG7 672 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 RNF34Q969K3 372 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 EAF1Q96JC9 268 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-210ENST00000553693 HDAC8Q9BY41 377 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 RAPGEFL1Q9UHV5 662 aa6.89□□□□□ -1.31
SCFD1-210ENST00000553693 TNFRSF10CO14798 259 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 NME1P15531 152 aaKnown RBP6.88□□□□□ -1.31
SCFD1-210ENST00000553693 TEKQ02763 1124 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 NBPF9Q3BBW0 867 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 SPPL2CQ8IUH8 684 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 SIAH1Q8IUQ4 282 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 ZNF655Q8N720 491 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-210ENST00000553693 ANKS4BQ8N8V4 417 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 ZNRF3Q9ULT6 936 aa6.88□□□□□ -1.31
SCFD1-210ENST00000553693 SCAMP3O14828 347 aaKnown RBP6.87□□□□□ -1.31
SCFD1-210ENST00000553693 ERVFC1P60507 584 aa6.87□□□□□ -1.31
SCFD1-210ENST00000553693 NR0B2Q15466 257 aa6.87□□□□□ -1.31
SCFD1-210ENST00000553693 PRR23BQ6ZRT6 265 aa6.87□□□□□ -1.31
SCFD1-210ENST00000553693 FBXO15Q8NCQ5 510 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-210ENST00000553693 EPB41L4BQ9H329 900 aa6.87□□□□□ -1.31
SCFD1-210ENST00000553693 NSUN3Q9H649 340 aaKnown RBP6.87□□□□□ -1.31
SCFD1-210ENST00000553693 SSU72P8A0A1W2PR75 194 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 TSPAN15O95858 294 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 PCBP3P57721 371 aaKnown RBP6.86□□□□□ -1.31
SCFD1-210ENST00000553693 ZNF394Q53GI3 561 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 LRRC56Q8IYG6 542 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-210ENST00000553693 DHRS1Q96LJ7 313 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 SLC6A18Q96N87 628 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 FERD3LQ96RJ6 166 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 DIRC2Q96SL1 478 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 MKRN2Q9H000 416 aaKnown RBP6.86□□□□□ -1.31
SCFD1-210ENST00000553693 SLC6A17Q9H1V8 727 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 ANTXR1Q9H6X2 564 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 PCDHGB7Q9Y5F8 929 aa6.86□□□□□ -1.31
SCFD1-210ENST00000553693 SIGLEC6O43699 453 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 RECKO95980 971 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 RAP1GAPP47736 663 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 TMC3Q7Z5M5 1100 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 ZSCAN18Q8TBC5 510 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-210ENST00000553693 TCTN2Q96GX1 697 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 RNF32Q9H0A6 362 aa6.85□□□□□ -1.31
SCFD1-210ENST00000553693 CWC22Q9HCG8 908 aaKnown RBP6.85□□□□□ -1.31
SCFD1-210ENST00000553693 DCP1AQ9NPI6 582 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-210ENST00000553693 PRAMEF1O95521 474 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 ZSCAN22P10073 491 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 ENDOUP21128 410 aaKnown RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 TRHRP34981 398 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 COL9A2Q14055 689 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 SNX17Q15036 470 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 INTS3Q68E01 1043 aaKnown RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 SYDE1Q6ZW31 735 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 WAPLQ7Z5K2 1190 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 ZNF654Q8IZM8 581 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 TAB3Q8N5C8 712 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 ZNF512BQ96KM6 892 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 SLC9A7Q96T83 725 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 TM9SF2Q99805 663 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 PRDM14Q9GZV8 571 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 PRR13Q9NZ81 148 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 DDX41Q9UJV9 622 aaKnown RBP6.84□□□□□ -1.31
SCFD1-210ENST00000553693 TCFL5Q9UL49 500 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 PCDHB12Q9Y5F1 795 aa6.84□□□□□ -1.31
SCFD1-210ENST00000553693 SYPP08247 313 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 RPL10P27635 214 aaKnown RBP6.83□□□□□ -1.32
SCFD1-210ENST00000553693 SNW1Q13573 536 aaKnown RBP6.83□□□□□ -1.32
SCFD1-210ENST00000553693 IRF2BP1Q8IU81 584 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 TMEM192Q8IY95 271 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 LINC00116Q8NCU8 138 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 LINC01599Q8WXQ3 324 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 SPATA32Q96LK8 384 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 FOXP3Q9BZS1 431 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 C19orf44Q9H6X5 657 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 SP110Q9HB58 689 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 CHST7Q9NS84 486 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 SUCOQ9UBS9 1254 aaKnown RBP6.83□□□□□ -1.32
SCFD1-210ENST00000553693 ZMYM5Q9UJ78 669 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 ZNF281Q9Y2X9 895 aa6.83□□□□□ -1.32
SCFD1-210ENST00000553693 NFIBO00712 420 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 FBXW10Q5XX13 1052 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 USHBP1Q8N6Y0 703 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 SMARCC1Q92922 1105 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-210ENST00000553693 MAP6Q96JE9 813 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 SLC26A8Q96RN1 970 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 G6PC3Q9BUM1 346 aa6.82□□□□□ -1.32
SCFD1-210ENST00000553693 GPR160Q9UJ42 338 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms