RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 TMX4Q9H1E5 349 aaPredicted RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 GPR108Q9NPR9 543 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 CNNM1Q9NRU3 951 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 KLK14Q9P0G3 267 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 EXOC6BQ9Y2D4 811 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 RTL9Q8NET4 1388 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 C9orf172C9J069 976 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 ALDH1B1P30837 517 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 RFX5P48382 616 aaPredicted RBP6.11□□□□□ -1.43
VTI1B-202ENST00000553619 RAC1P63000 192 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 SMIM5Q71RC9 77 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 RPGRQ92834 1020 aaKnown RBP6.11□□□□□ -1.43
VTI1B-202ENST00000553619 BRIP1Q9BX63 1249 aa6.11□□□□□ -1.43
VTI1B-202ENST00000553619 PA2G4Q9UQ80 394 aaKnown RBP6.11□□□□□ -1.43
VTI1B-202ENST00000553619 AOX1Q06278 1338 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 TTC41PQ6P2S7 1318 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 MROH5Q6ZUA9 1318 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 SCO2A0A1W2PP80 73 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 POLRMTO00411 1230 aaKnown RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 BBOX1O75936 387 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 POLD1P28340 1107 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 ARID4AP29374 1257 aaPredicted RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 INPP5BP32019 993 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 IDH3AP50213 366 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 RPS8P62241 208 aaKnown RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 PCSK7Q16549 785 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 PRSS36Q5K4E3 855 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 CCDC158Q5M9N0 1113 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 PRR5LQ6MZQ0 368 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 KRT25Q7Z3Z0 450 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 TMC4Q7Z404 712 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 DMRTC2Q8IXT2 367 aaPredicted RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 FMR1NBQ8N0W7 255 aaPredicted RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 SYNE4Q8N205 404 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 CCDC97Q96F63 343 aaPredicted RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 ANKRD2Q9GZV1 360 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 SIL1Q9H173 461 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 GREM2Q9H772 168 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 BSDC1Q9NW68 430 aaPredicted RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 ZFATQ9P243 1243 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 NOVA2Q9UNW9 492 aaKnown RBP6.1□□□□□ -1.43
VTI1B-202ENST00000553619 C4AP0C0L4 1744 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 QSER1Q2KHR3 1735 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 SCN7AQ01118 1682 aa6.1□□□□□ -1.43
VTI1B-202ENST00000553619 RIC1Q4ADV7 1423 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 H0YIN7 160 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 SMARCA5O60264 1052 aaPredicted RBP6.09□□□□□ -1.43
VTI1B-202ENST00000553619 RGS9O75916 674 aaPredicted RBP6.09□□□□□ -1.43
VTI1B-202ENST00000553619 GLRX3O76003 335 aaKnown RBP6.09□□□□□ -1.43
VTI1B-202ENST00000553619 SASH1O94885 1247 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 MMP10P09238 476 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 IFIT1P09914 478 aaKnown RBP6.09□□□□□ -1.43
VTI1B-202ENST00000553619 CPB1P15086 417 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 ARSDP51689 593 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 PDE1AP54750 535 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 PLAURQ03405 335 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 TFCP2Q12800 502 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 DGKZQ13574 1117 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 METTL24Q5JXM2 366 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 GORABQ5T7V8 394 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 CASC1Q6TDU7 716 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 FAM35AQ86V20 835 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 AACSQ86V21 672 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 TXNRD3Q86VQ6 643 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 AMIGO3Q86WK7 504 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 LENG1Q96BZ8 264 aaPredicted RBP6.09□□□□□ -1.43
VTI1B-202ENST00000553619 NEUROD6Q96NK8 337 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 CRAMP1Q96RY5 1269 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 BCL11AQ9H165 835 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 IL1RAPL2Q9NP60 686 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 STAP2Q9UGK3 403 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 RIPOR2Q9Y4F9 1068 aa6.09□□□□□ -1.43
VTI1B-202ENST00000553619 KLRG2A4D1S0 409 aaPredicted RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 ZBTB42B2RXF5 422 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 PDE8BO95263 885 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 MAP3K6O95382 1288 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 SLC5A1P13866 664 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 NPR1P16066 1061 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 MX1P20591 662 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 HOXA10P31260 410 aaPredicted RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 MLLT1Q03111 559 aaPredicted RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 GRAPQ13588 217 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 UBE4AQ14139 1066 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 SWI5Q1ZZU3 235 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 LRRFIP1Q32MZ4 808 aaKnown RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 LRRC24Q50LG9 513 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 TNNI3KQ59H18 835 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 BMP2KLQ5H9B9 411 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 ATG9AQ7Z3C6 839 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 TICAM2Q86XR7 235 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 C16orf71Q8IYS4 520 aaPredicted RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 KLHDC4Q8TBB5 520 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 GRAPLQ8TC17 118 aaPredicted RBP6.08□□□□□ -1.44
VTI1B-202ENST00000553619 LPIN2Q92539 896 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 MASTLQ96GX5 879 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 LPIN3Q9BQK8 851 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 MTFR1LQ9H019 292 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 SEC31BQ9NQW1 1179 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 ECHDC1Q9NTX5 307 aa6.08□□□□□ -1.44
VTI1B-202ENST00000553619 LEMD3Q9Y2U8 911 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms