RNA–Protein interactions for RNA: ENST00000553578.5

RDH11-204, Transcript of retinol dehydrogenase 11, humanhuman

TSL 1 (best)

Gene RDH11, Length 4,035 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-204ENST00000553578 MCTP2Q6DN12 878 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 C1orf228Q6PIY5 440 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 TRIM50Q86XT4 487 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 RNF214Q8ND24 703 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 THOC1Q96FV9 657 aaKnown RBP4.62□□□□□ -1.67
RDH11-204ENST00000553578 SPON2Q9BUD6 331 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 API5Q9BZZ5 524 aaKnown RBP4.62□□□□□ -1.67
RDH11-204ENST00000553578 IRF2BPLQ9H1B7 796 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 ZNF395Q9H8N7 513 aaPredicted RBP4.62□□□□□ -1.67
RDH11-204ENST00000553578 CCDC87Q9NVE4 849 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 DOCK2Q92608 1830 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 CCDC196A0A1B0GTZ2 297 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 TRAPPC10P48553 1259 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 TBC1D8BQ0IIM8 1120 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 ANKS3Q6ZW76 656 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 NEK11Q8NG66 645 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 DNAAF4Q8WXU2 420 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 CCDC194A0A1B0GVG4 234 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 ZRANB2O95218 330 aaKnown RBP eCLIP4.62□□□□□ -1.67
RDH11-204ENST00000553578 MEI1Q5TIA1 1274 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 TRIM46Q7Z4K8 759 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 SIRT2Q8IXJ6 389 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 IL17REQ8NFR9 667 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 ALG2Q9H553 416 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 DCTPP1Q9H773 170 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 PICK1Q9NRD5 415 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 ETAA1Q9NY74 926 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 RABGAP1Q9Y3P9 1069 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 DNMT3AQ9Y6K1 912 aaPredicted RBP4.62□□□□□ -1.67
RDH11-204ENST00000553578 MYH3P11055 1940 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 AK9Q5TCS8 1911 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 GNAT3A8MTJ3 354 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 C21orf2O43822 256 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 GCP02774 474 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 PTGIRP43119 386 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 NFKB2Q00653 900 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 TXLNBQ8N3L3 684 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 GPR152Q8TDT2 470 aa4.62□□□□□ -1.67
RDH11-204ENST00000553578 CHCHD3Q9NX63 227 aaKnown RBP4.62□□□□□ -1.67
RDH11-204ENST00000553578 DOT1LQ8TEK3 1739 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 TAF1LQ8IZX4 1826 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 KINO60870 393 aaKnown RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 IRX1P78414 480 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 MECOMQ03112 1051 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 SLC27A3Q5K4L6 730 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 RPAP2Q8IXW5 612 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 ANKRD42Q8N9B4 389 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 SPC24Q8NBT2 197 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 KCNB2Q92953 911 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 TRIM47Q96LD4 638 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 CCDC85AQ96PX6 553 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 KIF2CQ99661 725 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 SLX1AQ9BQ83 275 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 PUF60Q9UHX1 559 aaKnown RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 LZTS3O60299 673 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 SMC2O95347 1197 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 RDXP35241 583 aaKnown RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 TBC1D10BQ4KMP7 808 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 ESCO1Q5FWF5 840 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 Q6ZVU0 165 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 C8orf58Q8NAV2 365 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 AS3MTQ9HBK9 375 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 ARHGEF10LQ9HCE6 1279 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 CTDP1Q9Y5B0 961 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 LRRFIP2Q9Y608 721 aaKnown RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 FIGNL2A6NMB9 653 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 TTLL8A6PVC2 850 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 NAT1P18440 290 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 ERVK-9P63128 1117 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 BMP2KLQ5H9B9 411 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 GJC2Q5T442 439 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 CLEC17AQ6ZS10 378 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 ANKRD44Q8N8A2 993 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 NFATC2IPQ8NCF5 419 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 ZNF396Q96N95 335 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 CDC6Q99741 560 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 RWDD1Q9H446 243 aaPredicted RBP4.61□□□□□ -1.67
RDH11-204ENST00000553578 STAP2Q9UGK3 403 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 RFX7Q2KHR2 1363 aa4.61□□□□□ -1.67
RDH11-204ENST00000553578 POLR3GO15318 223 aaPredicted RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 SLC26A4O43511 780 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 LILRA1O75019 489 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 EIF4A1P60842 406 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 NEXNQ0ZGT2 675 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 TCIRG1Q13488 830 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 RRS1Q15050 365 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 RBBP5Q15291 538 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 TAF7Q15545 349 aaPredicted RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 MEX3CQ5U5Q3 659 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 CXorf38Q8TB03 319 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 HNRNPLLQ8WVV9 542 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 INSM2Q96T92 566 aaPredicted RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 DDX41Q9UJV9 622 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 RRP15Q9Y3B9 282 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 LAMA4Q16363 1823 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 NRXN2Q9P2S2 1712 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 CA8P35219 290 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 ADD1P35611 737 aaKnown RBP4.6□□□□□ -1.67
RDH11-204ENST00000553578 LMNB2Q03252 620 aa4.6□□□□□ -1.67
RDH11-204ENST00000553578 SF3B2Q13435 895 aaKnown RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms