RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TNS4Q8IZW8 715 aa16.62■□□□□ 0.25
PTCH1-226ENST00000553011 GTF3C2Q8WUA4 911 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-226ENST00000553011 ATG4CQ96DT6 458 aa16.62■□□□□ 0.25
PTCH1-226ENST00000553011 TRIM47Q96LD4 638 aa16.62■□□□□ 0.25
PTCH1-226ENST00000553011 ZSCAN10Q96SZ4 725 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-226ENST00000553011 BTBD7Q9P203 1132 aa16.62■□□□□ 0.25
PTCH1-226ENST00000553011 FMNL1O95466 1100 aaPredicted RBP16.61■□□□□ 0.25
PTCH1-226ENST00000553011 MCCP23508 829 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 ERVK-9P63128 1117 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 ERVK-24P63145 666 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 RALYLQ86SE5 291 aaKnown RBP16.61■□□□□ 0.25
PTCH1-226ENST00000553011 GPRC5AQ8NFJ5 357 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 NCOA7Q8NI08 942 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 TTC14Q96N46 770 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 HOXC10Q9NYD6 342 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 RABGAP1Q9Y3P9 1069 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 TNKSO95271 1327 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 PLXNB2O15031 1838 aa16.61■□□□□ 0.25
PTCH1-226ENST00000553011 SMCHD1A6NHR9 2005 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 BMP3P12645 472 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 SLC1A4P43007 532 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 FCGRTP55899 365 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 COL9A3Q14050 684 aaPredicted RBP16.6■□□□□ 0.25
PTCH1-226ENST00000553011 CCDC178Q5BJE1 867 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 CHST3Q7LGC8 479 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 DGKHQ86XP1 1220 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 MB21D2Q8IYB1 491 aaPredicted RBP16.6■□□□□ 0.25
PTCH1-226ENST00000553011 ENAHQ8N8S7 591 aaPredicted RBP16.6■□□□□ 0.25
PTCH1-226ENST00000553011 GMCL1Q96IK5 515 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 UBAC1Q9BSL1 405 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 PPP1R9AQ9ULJ8 1098 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 ISY1Q9ULR0 285 aaKnown RBP16.6■□□□□ 0.25
PTCH1-226ENST00000553011 MYPNQ86TC9 1320 aa16.6■□□□□ 0.25
PTCH1-226ENST00000553011 ZNFX1Q9P2E3 1918 aaKnown RBP16.6■□□□□ 0.25
PTCH1-226ENST00000553011 REC8O95072 547 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 ANTXR2P58335 489 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 ARHGEF6Q15052 776 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 KCTD1Q719H9 257 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 RASEFQ8IZ41 740 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 ANKS1AQ92625 1134 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 SLF1Q9BQI6 1058 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 PORCNQ9H237 461 aa16.59■□□□□ 0.25
PTCH1-226ENST00000553011 BAZ2BQ9UIF8 2168 aaKnown RBP16.58■□□□□ 0.25
PTCH1-226ENST00000553011 TMEM232C9JQI7 657 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 TNPO2O14787 897 aaKnown RBP16.58■□□□□ 0.24
PTCH1-226ENST00000553011 SEC23AQ15436 765 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 CCDC96Q2M329 555 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 RNF20Q5VTR2 975 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 FBXO46Q6PJ61 603 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-226ENST00000553011 DCAF4Q8WV16 495 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 FEM1BQ9UK73 627 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 ADAMTS5Q9UNA0 930 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 PTPN22Q9Y2R2 807 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 MYH6P13533 1939 aa16.58■□□□□ 0.24
PTCH1-226ENST00000553011 KIAA0100Q14667 2235 aaKnown RBP16.57■□□□□ 0.24
PTCH1-226ENST00000553011 FRMPD2Q68DX3 1309 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-226ENST00000553011 VWA5AO00534 786 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 PDHBP11177 359 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 TMEM132BQ14DG7 1078 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 PKN2Q16513 984 aaKnown RBP16.57■□□□□ 0.24
PTCH1-226ENST00000553011 MB21D1Q8N884 522 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 PRPF38AQ8NAV1 312 aaKnown RBP16.57■□□□□ 0.24
PTCH1-226ENST00000553011 PNMA1Q8ND90 353 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 KIFC2Q96AC6 838 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 KAT14Q9H8E8 782 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 SENP2Q9HC62 589 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 SRRDQ9UH36 339 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 GABRQQ9UN88 632 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 PTCH2Q9Y6C5 1203 aa16.57■□□□□ 0.24
PTCH1-226ENST00000553011 IFIT3O14879 490 aaKnown RBP16.56■□□□□ 0.24
PTCH1-226ENST00000553011 GNRH1P01148 92 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 HSPA4P34932 840 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 CCNA1P78396 465 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 PRKCZQ05513 592 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 IKQ13123 557 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-226ENST00000553011 PLS1Q14651 629 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 ADCK5Q3MIX3 580 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 IFIT1BQ5T764 474 aaKnown RBP16.56■□□□□ 0.24
PTCH1-226ENST00000553011 TTBK2Q6IQ55 1244 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 REPS2Q8NFH8 660 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 MOV10L1Q9BXT6 1211 aaKnown RBP16.56■□□□□ 0.24
PTCH1-226ENST00000553011 SPATC1LQ9H0A9 340 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 GPCPD1Q9NPB8 672 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
PTCH1-226ENST00000553011 HTTP42858 3142 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 PRC1O43663 620 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 SNHG28P0DPA3 235 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 ZKSCAN1P17029 563 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-226ENST00000553011 HOXD10P28358 340 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 STAT2P52630 851 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 TSGA10IPQ3SY00 556 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 TMEM67Q5HYA8 995 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 WDR78Q5VTH9 848 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 FAM160B2Q86V87 743 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 CCAR1Q8IX12 1150 aaKnown RBP16.55■□□□□ 0.24
PTCH1-226ENST00000553011 CHURC1Q8WUH1 139 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 KCNB2Q92953 911 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 COA7Q96BR5 231 aa16.55■□□□□ 0.24
PTCH1-226ENST00000553011 GPHNQ9NQX3 736 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-226ENST00000553011 ERICH2A1L162 156 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms