RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	UBE2F	Q969M7	185 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	SLC6A17	Q9H1V8	727 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	MSH6	P52701	1360 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM2	Q9UHN6	1383 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	DCC	P43146	1447 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	CASKIN1	Q8WXD9	1431 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	MROH1	Q8NDA8	1641 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	EP400	Q96L91	3159 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	AKAP8	O43823	692 aa	Known RBP	3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	TRHR	P34981	398 aa	Predicted RBP	3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	FGD1	P98174	961 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	SSPN	Q14714	243 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM132E	Q6IEE7	984 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	PRPF40B	Q6NWY9	871 aa	Known RBP	3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	ARMCX6	Q7L4S7	300 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	CRELD1	Q96HD1	420 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	SGPP1	Q9BX95	441 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	NPHS2	Q9NP85	383 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	TPX2	Q9ULW0	747 aa	Known RBP	3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	MYRF	Q9Y2G1	1151 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	CAPN6	Q9Y6Q1	641 aa		3.84	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM238L	A0A1B0GVL6	79 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	OVOL3	O00110	214 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	LRIG2	O94898	1065 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	SLITRK5	O94991	958 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	PI3	P19957	117 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	PPP2R3A	Q06190	1150 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZDHHC14	Q8IZN3	488 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	LILRA2	Q8N149	483 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	GPBAR1	Q8TDU6	330 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	TEPSIN	Q96N21	525 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	ADAMTS10	Q9H324	1103 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	SP110	Q9HB58	689 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	CCDC87	Q9NVE4	849 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZSWIM5	Q9P217	1185 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	GPN3	Q9UHW5	284 aa	Predicted RBP	3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	CSAD	Q9Y600	493 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	AFF2	P51816	1311 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	WASHC2C	Q9Y4E1	1318 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	BLM	P54132	1417 aa	Predicted RBP	3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	MAST1	Q9Y2H9	1570 aa		3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	EIF2AK4	Q9P2K8	1649 aa	Known RBP	3.83	□□□□□ -1.8
PTCH1-223	ENST00000551623	SPHKAP	Q2M3C7	1700 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	LAMC1	P11047	1609 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	UNC13B	O14795	1591 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	FYCO1	Q9BQS8	1478 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	FAM13A	O94988	1023 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	ESR1	P03372	595 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	MAP1S	Q66K74	1059 aa	Predicted RBP	3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	CDC37L1	Q7L3B6	337 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	SULF2	Q8IWU5	870 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	KCT2	Q8NC54	265 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	STK35	Q8TDR2	534 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	DACT3	Q96B18	629 aa	Predicted RBP	3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	ACSBG1	Q96GR2	724 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	INTS4	Q96HW7	963 aa	Known RBP	3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZNF552	Q9H707	407 aa	Predicted RBP	3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	PICK1	Q9NRD5	415 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	TMEM39A	Q9NV64	488 aa		3.82	□□□□□ -1.8
PTCH1-223	ENST00000551623	EFCAB6	Q5THR3	1501 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	CCDC141	Q6ZP82	1450 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	ATRN	O75882	1429 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	PNPLA6	Q8IY17	1366 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	SLC22A31	A6NKX4	558 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	KIF3B	O15066	747 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	FANCG	O15287	622 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	AFF3	P51826	1226 aa	Known RBP	3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	PLP2	Q04941	152 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	RING1	Q06587	406 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZBTB37	Q5TC79	503 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	TMPRSS7	Q7RTY8	843 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	TXNDC2	Q86VQ3	553 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	SP8	Q8IXZ3	490 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	PDZD8	Q8NEN9	1154 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	PANK1	Q8TE04	598 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	GPR20	Q99678	358 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	ADAM7	Q9H2U9	754 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	C19orf44	Q9H6X5	657 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	CWC22	Q9HCG8	908 aa	Known RBP	3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	EID1	Q9Y6B2	187 aa		3.81	□□□□□ -1.8
PTCH1-223	ENST00000551623	ARHGEF5	Q12774	1597 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	ASXL1	Q8IXJ9	1541 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZFYVE9	O95405	1425 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	PTCH1	Q13635	1447 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	PIK3R4	Q99570	1358 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZC3H12D	A2A288	527 aa	Known RBP	3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	CARNS1	A5YM72	827 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	DCDC2C	A8MYV0	355 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	CBX7	O95931	251 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	NEFL	P07196	543 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	ARNT	P27540	789 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	TIGD5	Q53EQ6	642 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	MEX3C	Q5U5Q3	659 aa	Known RBP	3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	BRINP3	Q76B58	766 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	C12orf40	Q86WS4	652 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	SIGLEC10	Q96LC7	697 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	MIPEP	Q99797	713 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	BDH2	Q9BUT1	245 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	CACNA2D2	Q9NY47	1150 aa		3.8	□□□□□ -1.8

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