RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 RPTORQ8N122 1335 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 SIPA1L1O43166 1804 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 TNFRSF10AO00220 468 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 MAPK4P31152 587 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 USP5P45974 858 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 COPS2P61201 443 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 DYNLL1P63167 89 aaKnown RBP9.27□□□□□ -0.93
NEK3-201ENST00000550331 MAP3K12Q12852 859 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 SHROOM1Q2M3G4 852 aaPredicted RBP9.27□□□□□ -0.93
NEK3-201ENST00000550331 HSP90AB4PQ58FF6 505 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 USP17L2Q6R6M4 530 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 TRMT44Q8IYL2 757 aaKnown RBP9.27□□□□□ -0.93
NEK3-201ENST00000550331 MAGEB6Q8N7X4 407 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 C12orf42Q96LP6 360 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 P2RX7Q99572 595 aaKnown RBP9.27□□□□□ -0.93
NEK3-201ENST00000550331 LARP6Q9BRS8 491 aaKnown RBP9.27□□□□□ -0.93
NEK3-201ENST00000550331 SERPINB13Q9UIV8 391 aa9.27□□□□□ -0.93
NEK3-201ENST00000550331 GH2P01242 217 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 MS4A1P11836 297 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 CYP2B6P20813 491 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 USP14P54578 494 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 PDE3AQ14432 1141 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 MFSD10Q14728 455 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 TTF1Q15361 905 aaPredicted RBP9.26□□□□□ -0.93
NEK3-201ENST00000550331 MAP3K21Q5TCX8 1036 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 TTC6Q86TZ1 520 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 AACSQ86V21 672 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 MIGA1Q8NAN2 632 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 TRIB2Q92519 343 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 NUDT12Q9BQG2 462 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 RIOK1Q9BRS2 568 aaKnown RBP9.26□□□□□ -0.93
NEK3-201ENST00000550331 C11orf49Q9H6J7 331 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 ANTXR1Q9H6X2 564 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 TXNRD2Q9NNW7 524 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 RBPJLQ9UBG7 517 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 ZBED9Q6R2W3 1325 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 PLXNB2O15031 1838 aa9.26□□□□□ -0.93
NEK3-201ENST00000550331 SPTBN5Q9NRC6 3674 aaKnown RBP9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L15C9J2P7 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L13C9JLJ4 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L11C9JVI0 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L18D6R9N7 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L22D6RA61 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L17D6RBQ6 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L19D6RCP7 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L20D6RJB6 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 ZKSCAN1P17029 563 aaPredicted RBP9.25□□□□□ -0.93
NEK3-201ENST00000550331 ERVK-9P63128 1117 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 ERVK-24P63145 666 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP17L24Q0WX57 530 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 TRIM32Q13049 653 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 CERKLQ49MI3 558 aaPredicted RBP9.25□□□□□ -0.93
NEK3-201ENST00000550331 CCAR1Q8IX12 1150 aaKnown RBP9.25□□□□□ -0.93
NEK3-201ENST00000550331 RHPN1Q8TCX5 695 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.25□□□□□ -0.93
NEK3-201ENST00000550331 USP6NLQ92738 828 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 FEZ1Q99689 392 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 KIAA1683Q9H0B3 1180 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 OGDHLQ9ULD0 1010 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 EXOC6BQ9Y2D4 811 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 FOCADQ5VW36 1801 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 ATAD5Q96QE3 1844 aa9.25□□□□□ -0.93
NEK3-201ENST00000550331 MAGEB6P1A0A0J9YX57 407 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 SMAPO00193 183 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 PEX10O60683 326 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 RNF40O75150 1001 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 SHMT1P34896 483 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 RGS2P41220 211 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 CCNA1P78396 465 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 RAB3GAP1Q15042 981 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 ABCB5Q2M3G0 1257 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 Q3C1V9 767 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 MORN1Q5T089 497 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 LBX2Q6XYB7 198 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 GPR142Q7Z601 462 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 PLEKHH3Q7Z736 793 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 RPAP2Q8IXW5 612 aaPredicted RBP9.24□□□□□ -0.93
NEK3-201ENST00000550331 CLASRPQ8N2M8 674 aaKnown RBP9.24□□□□□ -0.93
NEK3-201ENST00000550331 PANK1Q8TE04 598 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 KIF1BPQ96EK5 621 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 FAM161BQ96MY7 647 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 GUCD1Q96NT3 240 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 APBA2Q99767 749 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 PAGR1Q9BTK6 254 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 PORCNQ9H237 461 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 IL1RAPL2Q9NP60 686 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 CABP5Q9NP86 173 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 GMPR2Q9P2T1 348 aaKnown RBP9.24□□□□□ -0.93
NEK3-201ENST00000550331 RABGAP1Q9Y3P9 1069 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 NDUFB9Q9Y6M9 179 aa9.24□□□□□ -0.93
NEK3-201ENST00000550331 HMMRO75330 724 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 GLRX3O76003 335 aaKnown RBP9.23□□□□□ -0.93
NEK3-201ENST00000550331 POLR3DP05423 398 aaPredicted RBP9.23□□□□□ -0.93
NEK3-201ENST00000550331 PDE6AP16499 860 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 VCAM1P19320 739 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 PLCD1P51178 756 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 GABPAQ06546 454 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 ZYXQ15942 572 aaKnown RBP9.23□□□□□ -0.93
NEK3-201ENST00000550331 SLC9C2Q5TAH2 1124 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 CATSPERGQ6ZRH7 1159 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms