RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 MAP3K10Q02779 954 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 TROAPQ12815 778 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 TNFAIP1Q13829 316 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 DGKHQ86XP1 1220 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 APOBEC3FQ8IUX4 373 aaKnown RBP9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 CCDC144CPQ8IYA2 1237 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 KCNV2Q8TDN2 545 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 DDX12PQ92771 950 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 ZDHHC16Q969W1 377 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 CCDC17Q96LX7 622 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 CWC22Q9HCG8 908 aaKnown RBP9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 CHMP5Q9NZZ3 219 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 HERC5Q9UII4 1024 aaKnown RBP9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 SMC3Q9UQE7 1217 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 SLC12A7Q9Y666 1083 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 PHIPQ8WWQ0 1821 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 MYH15Q9Y2K3 1946 aa9.46□□□□□ -0.9
DEPDC4-207ENST00000549249 PTPDC1A2A3K4 754 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 SPDYE16A6NNV3 312 aaPredicted RBP9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 DDAH1O94760 285 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 GDF11O95390 407 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 NTRK3Q16288 839 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 CERKLQ49MI3 558 aaPredicted RBP9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 CCDC178Q5BJE1 867 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 RASGRP2Q7LDG7 609 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 TMEM47Q9BQJ4 181 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 LLPHQ9BRT6 129 aaKnown RBP9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 DEFB129Q9H1M3 183 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 MTMR4Q9NYA4 1195 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 ZDHHC9Q9Y397 364 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 ARIH1Q9Y4X5 557 aaPredicted RBP9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 PCDHGA10Q9Y5H3 936 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 PITPNM2Q9BZ72 1349 aa9.45□□□□□ -0.9
DEPDC4-207ENST00000549249 PPFIA3O75145 1194 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 PLEKHA8P1O95397 391 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 FDPSP14324 419 aaKnown RBP9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 EPHX2P34913 555 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 FUT2Q10981 343 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 SEPT2Q15019 361 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 RAB3GAP1Q15042 981 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 RTN1Q16799 776 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 NBPF12Q5TAG4 269 aaPredicted RBP9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 PRAMEF18Q5VWM3 479 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 SYNE3Q6ZMZ3 975 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 MIGA2Q7L4E1 593 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 CATIPQ7Z7H3 387 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 SIAH1Q8IUQ4 282 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 JMYQ8N9B5 988 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 FANCBQ8NB91 859 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 PNMA1Q8ND90 353 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 NUP133Q8WUM0 1156 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 DDX11Q96FC9 970 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 TRIM34Q9BYJ4 488 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 ADAM33Q9BZ11 813 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 KAT14Q9H8E8 782 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 STX8Q9UNK0 236 aa9.44□□□□□ -0.9
DEPDC4-207ENST00000549249 CNTNAP5Q8WYK1 1306 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 PHF20L1A8MW92 1017 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 ADM5C9JUS6 153 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 UBE2Q2LH0YL09 131 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 MPHOSPH10O00566 681 aaKnown RBP9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 TTLL1O95922 423 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 GH2P01242 217 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 TOP1P11387 765 aaKnown RBP9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 IFNAR1P17181 557 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 GRM4Q14833 912 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 ABCB5Q2M3G0 1257 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 SLC35G1Q2M3R5 365 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 TYW1BQ6NUM6 668 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 DLK2Q6UY11 383 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 TMEM179Q6ZVK1 233 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 USP50Q70EL3 339 aaPredicted RBP9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 NBPF11Q86T75 865 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 LRRC47Q8N1G4 583 aaKnown RBP9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 PHKBQ93100 1093 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 TAF1DQ9H5J8 278 aaPredicted RBP9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 ZBTB21Q9ULJ3 1066 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 VPS9D1Q9Y2B5 631 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 PPP2R3BQ9Y5P8 575 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 PTPRFP10586 1907 aa9.43□□□□□ -0.9
DEPDC4-207ENST00000549249 STK36Q9NRP7 1315 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 IQCA1LA6NCM1 817 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CPLX1O14810 134 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 BRD1O95696 1058 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CALM1P0DP23 149 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CALM2P0DP24 149 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CALM3P0DP25 149 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 EEF2P13639 858 aaKnown RBP9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 SYT1P21579 422 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 PTPREP23469 700 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CAP2P40123 477 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 HMGN5P82970 282 aaKnown RBP9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 HTRA3P83110 453 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 ICA1Q05084 483 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 TMTC3Q6ZXV5 915 aa9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 CMTR1Q8N1G2 835 aaKnown RBP9.42□□□□□ -0.9
DEPDC4-207ENST00000549249 STAG2Q8N3U4 1231 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms