RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CDX2Q99626 313 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-204ENST00000549064 PLA2G12BQ9BX93 195 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 ZNF341Q9BYN7 854 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 ZNF358Q9NW07 568 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 PLXNB2O15031 1838 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 PHIPQ8WWQ0 1821 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 CAPN2P17655 700 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 NEXNQ0ZGT2 675 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 NAA30Q147X3 362 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-204ENST00000549064 DCAF15Q66K64 600 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 NYAP1Q6ZVC0 841 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 TRMT44Q8IYL2 757 aaKnown RBP8.25□□□□□ -1.09
LIMA1-204ENST00000549064 MYLIPQ8WY64 445 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 KCTD15Q96SI1 283 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-204ENST00000549064 DCTN4Q9UJW0 460 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 IQSEC3Q9UPP2 1182 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-204ENST00000549064 MAST2Q6P0Q8 1798 aa8.25□□□□□ -1.09
LIMA1-204ENST00000549064 LTBP2Q14767 1821 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 FRMPD3Q5JV73 1810 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 DOCK2Q92608 1830 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 RPAP1Q9BWH6 1393 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-204ENST00000549064 STAU1O95793 577 aaKnown RBP8.24□□□□□ -1.09
LIMA1-204ENST00000549064 ZNF853P0CG23 659 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 PLA2G5P39877 138 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 PTPN5P54829 565 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 ARHGAP4P98171 946 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 CHAF1AQ13111 956 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-204ENST00000549064 GCKRQ14397 625 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 G2E3Q7L622 706 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 FBXO33Q7Z6M2 555 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 FAM83AQ86UY5 434 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 TSPYL6Q8N831 410 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 TMOD2Q9NZR1 351 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 CDV3Q9UKY7 258 aaKnown RBP8.24□□□□□ -1.09
LIMA1-204ENST00000549064 CHMP3Q9Y3E7 222 aa8.24□□□□□ -1.09
LIMA1-204ENST00000549064 POTEMA6NI47 508 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 M0R2N6 131 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 HMGCRP04035 888 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 HIBADHP31937 336 aaKnown RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 TCP10Q12799 353 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 IFIT5Q13325 482 aaKnown RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 LRRC26Q2I0M4 334 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 INTS6LQ5JSJ4 861 aaKnown RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 CCDC30Q5VVM6 783 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 APOBEC3HQ6NTF7 200 aaKnown RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 GADL1Q6ZQY3 521 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 ANKRD13CQ8N6S4 541 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 SMCR8Q8TEV9 937 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 TEKT1Q969V4 418 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 COA7Q96BR5 231 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 HOOK2Q96ED9 719 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 FAM84BQ96KN1 310 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-204ENST00000549064 ASB16Q96NS5 453 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 SEMA6BQ9H3T3 888 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 ZNF112Q9UJU3 913 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 DOCK1Q14185 1865 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 MYH13Q9UKX3 1938 aa8.23□□□□□ -1.09
LIMA1-204ENST00000549064 TMEM265A0A087WTH1 108 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 A0A0G2JLL6 359 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-204ENST00000549064 TMEM229AB2RXF0 380 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 ERVH48-1M5A8F1 160 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 TNFRSF10AO00220 468 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 CXCL11O14625 94 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 TCF3P15923 654 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 FOXO4P98177 505 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 NOL9Q5SY16 702 aaKnown RBP8.22□□□□□ -1.09
LIMA1-204ENST00000549064 PRRT2Q7Z6L0 340 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-204ENST00000549064 RUNDC1Q96C34 613 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 FAM122AQ96E09 287 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 ZDHHC15Q96MV8 337 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 TTYH1Q9H313 450 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-204ENST00000549064 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-204ENST00000549064 OGDHLQ9ULD0 1010 aa8.22□□□□□ -1.09
LIMA1-204ENST00000549064 SLURP2P0DP57 97 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 COL6A1P12109 1028 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 FOSL2P15408 326 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 HDLBPQ00341 1268 aaKnown RBP8.21□□□□□ -1.1
LIMA1-204ENST00000549064 NFIAQ12857 509 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 EPHA10Q5JZY3 1008 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 FKBP1CQ5VVH2 108 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 LDHAL6AQ6ZMR3 332 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 VASH1Q7L8A9 365 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-204ENST00000549064 FASTKD5Q7L8L6 764 aaKnown RBP8.21□□□□□ -1.1
LIMA1-204ENST00000549064 CCDC84Q86UT8 332 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-204ENST00000549064 USP38Q8NB14 1042 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 SCG3Q8WXD2 468 aaKnown RBP8.21□□□□□ -1.1
LIMA1-204ENST00000549064 TRIB2Q92519 343 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 CNNM1Q9NRU3 951 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 ZHX2Q9Y6X8 837 aa8.21□□□□□ -1.1
LIMA1-204ENST00000549064 PTPRAP18433 802 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 IGFBP4P22692 258 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 UBE4AQ14139 1066 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 SHHQ15465 462 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 TAF7LQ5H9L4 462 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 C9orf50Q5SZB4 431 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 LMBR1LQ6UX01 489 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 ZSCAN29Q8IWY8 852 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-204ENST00000549064 ZFPM1Q8IX07 1006 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 SCYL3Q8IZE3 742 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 HELQQ8TDG4 1101 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms