RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 BPIFA3Q9BQP9 254 aa14.14□□□□□ -0.15
PTCH1-212ENST00000546744 DDX23Q9BUQ8 820 aaKnown RBP14.14□□□□□ -0.15
PTCH1-212ENST00000546744 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.14□□□□□ -0.15
PTCH1-212ENST00000546744 ATP5HO75947 161 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 ATP5JP18859 108 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 MAN1A1P33908 653 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 KLHL7Q8IXQ5 586 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 ARHGAP18Q8N392 663 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 CRACR2BQ8N4Y2 399 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 BICC1Q9H694 974 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 INTS9Q9NV88 658 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 CTTNBP2NLQ9P2B4 639 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 BZW2Q9Y6E2 419 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 TPD52P55327 224 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 KLHL29Q96CT2 875 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 FANCLQ9NW38 375 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 FAM169AQ9Y6X4 670 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 USP19O94966 1318 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 TECPR2O15040 1411 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 KCNJ18B7U540 433 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 GMNNO75496 209 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 ATP1A2P50993 1020 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 KCNJ12Q14500 433 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 SLC35F6Q8N357 371 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 ASIC3Q9UHC3 531 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 PCDHA7Q9UN72 937 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 SETD1BQ9UPS6 1966 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 CALUO43852 315 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 SEC31AO94979 1220 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 MYL1P05976 194 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 VTI1AQ96AJ9 217 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 RRP36Q96EU6 259 aaKnown RBP14.13□□□□□ -0.15
PTCH1-212ENST00000546744 TSC22D3Q99576 134 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 VIPAS39Q9H9C1 493 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 NRBP1Q9UHY1 535 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 PPP1R9AQ9ULJ8 1098 aa14.13□□□□□ -0.15
PTCH1-212ENST00000546744 USP6P35125 1406 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 ANO9A1A5B4 782 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 MCM7P33993 719 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 IL13P35225 146 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 BIRC3Q13489 604 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 E2F4Q16254 413 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 USHBP1Q8N6Y0 703 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 SMC1BQ8NDV3 1235 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 FRMD4BQ9Y2L6 1034 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 HAUS3Q68CZ6 603 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 DESI2Q9BSY9 194 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 GEMIN8Q9NWZ8 242 aaKnown RBP14.12□□□□□ -0.15
PTCH1-212ENST00000546744 TMOD3Q9NYL9 352 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 FAF1Q9UNN5 650 aaPredicted RBP14.12□□□□□ -0.15
PTCH1-212ENST00000546744 CTIFO43310 598 aaKnown RBP14.12□□□□□ -0.15
PTCH1-212ENST00000546744 GTPBP6O43824 516 aaPredicted RBP14.12□□□□□ -0.15
PTCH1-212ENST00000546744 SLC39A14Q15043 492 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 KMT5BQ4FZB7 885 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 HEATR3Q7Z4Q2 680 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 STK38LQ9Y2H1 464 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 DMRT2Q9Y5R5 561 aa14.12□□□□□ -0.15
PTCH1-212ENST00000546744 CFAP73A6NFT4 308 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 NR1D1P20393 614 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 CUEDC2Q9H467 287 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 FAM13AO94988 1023 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 EEF2P13639 858 aaKnown RBP14.11□□□□□ -0.15
PTCH1-212ENST00000546744 KRT15P19012 456 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 CYP7A1P22680 504 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 IL9RQ01113 521 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 GABPB2Q8TAK5 448 aaPredicted RBP14.11□□□□□ -0.15
PTCH1-212ENST00000546744 XAGE3Q8WTP9 111 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 PHACTR3Q96KR7 559 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 ZKSCAN3Q9BRR0 538 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 RABEP2Q9H5N1 569 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 C3P01024 1663 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 PTPRUQ92729 1446 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 JAK2O60674 1132 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 MORC3Q14149 939 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 TNNI3KQ59H18 835 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 APLFQ8IW19 511 aaPredicted RBP14.11□□□□□ -0.15
PTCH1-212ENST00000546744 ZSCAN29Q8IWY8 852 aaPredicted RBP14.11□□□□□ -0.15
PTCH1-212ENST00000546744 LZTS2Q9BRK4 669 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 FPGT-TNNI3KV9GXZ4 949 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 PTCH1Q13635 1447 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 TSPY3P0CV98 308 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 TSPY8P0CW00 308 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 STMN1P16949 149 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 LIN9Q5TKA1 542 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 KRT25Q7Z3Z0 450 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 PLA2G4DQ86XP0 818 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 NOSTRINQ8IVI9 506 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 SYNCQ9H7C4 482 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 STX8Q9UNK0 236 aa14.11□□□□□ -0.15
PTCH1-212ENST00000546744 PA2G4Q9UQ80 394 aaKnown RBP14.11□□□□□ -0.15
PTCH1-212ENST00000546744 KRIT1O00522 736 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 CUL1Q13616 776 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 CERS3Q8IU89 383 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 CCDC105Q8IYK2 499 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.1□□□□□ -0.15
PTCH1-212ENST00000546744 CCDC85AQ96PX6 553 aaPredicted RBP14.1□□□□□ -0.15
PTCH1-212ENST00000546744 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.1□□□□□ -0.15
PTCH1-212ENST00000546744 UBR1Q8IWV7 1749 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 CREB3O43889 395 aa14.1□□□□□ -0.15
PTCH1-212ENST00000546744 HLA-DOAP06340 250 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms