RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NAPGQ99747 312 aaPredicted RBP17.55■□□□□ 0.4
CUX1-211ENST00000546411 MINPP1Q9UNW1 487 aa17.55■□□□□ 0.4
CUX1-211ENST00000546411 ANTXR2P58335 489 aa17.55■□□□□ 0.4
CUX1-211ENST00000546411 MAATS1Q7Z4T9 603 aa17.55■□□□□ 0.4
CUX1-211ENST00000546411 TMTC1Q8IUR5 882 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 ENAHQ8N8S7 591 aaPredicted RBP17.54■□□□□ 0.4
CUX1-211ENST00000546411 KCNF1Q9H3M0 494 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 NCAPH2Q6IBW4 605 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 CNNM4Q6P4Q7 775 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 IFT81Q8WYA0 676 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 MYO5BQ9ULV0 1848 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 PXDNLA1KZ92 1463 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 FAM205CA6NFA0 338 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 KIAA0754O94854 1291 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 RPN1P04843 607 aaKnown RBP17.54■□□□□ 0.4
CUX1-211ENST00000546411 MCM3P25205 808 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 ST3GAL1Q11201 340 aa17.54■□□□□ 0.4
CUX1-211ENST00000546411 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.53■□□□□ 0.4
CUX1-211ENST00000546411 TYW1BQ6NUM6 668 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 SHC4Q6S5L8 630 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 CTNNBL1Q8WYA6 563 aaPredicted RBP17.53■□□□□ 0.4
CUX1-211ENST00000546411 CKAP4Q07065 602 aaKnown RBP17.53■□□□□ 0.4
CUX1-211ENST00000546411 IFFO1Q0D2I5 559 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 PTPROQ16827 1216 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 ANKRD13CQ8N6S4 541 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 IKBKBO14920 756 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 DDAH1O94760 285 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 SLFN14P0C7P3 912 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 CAPN2P17655 700 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 FNBP4Q8N3X1 1017 aaPredicted RBP17.53■□□□□ 0.4
CUX1-211ENST00000546411 TIGD1Q96MW7 591 aa17.53■□□□□ 0.4
CUX1-211ENST00000546411 FAM13AO94988 1023 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 SLC16A2P36021 539 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 JAKMIP2Q96AA8 810 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 TBC1D9BQ66K14 1250 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 C2CD5Q86YS7 1000 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 CCDC65Q8IXS2 484 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 KIF20BQ96Q89 1820 aa17.52■□□□□ 0.4
CUX1-211ENST00000546411 ALDH8A1Q9H2A2 487 aaPredicted RBP17.52■□□□□ 0.39
CUX1-211ENST00000546411 BSDC1Q9NW68 430 aaPredicted RBP17.52■□□□□ 0.39
CUX1-211ENST00000546411 SRPRBQ9Y5M8 271 aaKnown RBP17.52■□□□□ 0.39
CUX1-211ENST00000546411 CPDO75976 1380 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 CFBP00751 764 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 PRR29P0C7W0 189 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 CETN1Q12798 172 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 RRAGAQ7L523 313 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 PLA2G4DQ86XP0 818 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 OR8K1Q8NGG5 319 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 COA7Q96BR5 231 aa17.52■□□□□ 0.39
CUX1-211ENST00000546411 NAA15Q9BXJ9 866 aaKnown RBP17.52■□□□□ 0.39
CUX1-211ENST00000546411 ITSN1Q15811 1721 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 IBSPP21815 317 aaPredicted RBP17.51■□□□□ 0.39
CUX1-211ENST00000546411 RBL2Q08999 1139 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 TRIML1Q8N9V2 468 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 RABEP2Q9H5N1 569 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 SOWAHDA6NJG2 315 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 DDX39AO00148 427 aaKnown RBP17.51■□□□□ 0.39
CUX1-211ENST00000546411 OR52Z1P0C646 297 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 PTPREP23469 700 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 USP49Q70CQ1 688 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 NEK8Q86SG6 692 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 STAG1Q8WVM7 1258 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.51■□□□□ 0.398e-7■■■■■ 154.8
CUX1-211ENST00000546411 CALCOCO1Q9P1Z2 691 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 CDHR2Q9BYE9 1310 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 GTPBP6O43824 516 aaPredicted RBP17.51■□□□□ 0.39
CUX1-211ENST00000546411 CDC25BP30305 580 aa17.51■□□□□ 0.39
CUX1-211ENST00000546411 MEGF6O75095 1541 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 ENC1O14682 589 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 CPXCR1Q8N123 301 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 GSDMAQ96QA5 445 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 CSF1RP07333 972 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 MAGEA1P43355 309 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 RESP18Q5W5W9 173 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 HS2ST1Q7LGA3 356 aa17.5■□□□□ 0.39
CUX1-211ENST00000546411 DHX40Q8IX18 779 aaKnown RBP17.5■□□□□ 0.39
CUX1-211ENST00000546411 BAZ2BQ9UIF8 2168 aaKnown RBP17.5■□□□□ 0.39
CUX1-211ENST00000546411 IQCB1Q15051 598 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 PIGSQ96S52 555 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 GDAQ9Y2T3 454 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 SIGLEC1Q9BZZ2 1709 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 CACNB1Q02641 598 aaPredicted RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 PAGE5Q96GU1 130 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 EHMT1Q9H9B1 1298 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 RSPH14Q9UHP6 348 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 PSDA5PKW4 1024 aaPredicted RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 TMEM110-MUSTN1A8MSY1 372 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 STX10O60499 249 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 COPB1P53618 953 aaKnown RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 LRRC41Q15345 812 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 SPICE1Q8N0Z3 855 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 ACRBPQ8NEB7 543 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 SH3RF3Q8TEJ3 882 aaPredicted RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 TBC1D22AQ8WUA7 517 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 FAM84BQ96KN1 310 aaPredicted RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 EPB41L4AQ9HCS5 686 aaPredicted RBP17.49■□□□□ 0.39
CUX1-211ENST00000546411 PCDHA12Q9UN75 941 aa17.49■□□□□ 0.39
CUX1-211ENST00000546411 B4DLN1 442 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 PRPF3O43395 683 aaKnown RBP17.48■□□□□ 0.39
CUX1-211ENST00000546411 NEFHP12036 1026 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms