RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 EYA3Q99504 573 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 RHOXF2Q9BQY4 288 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 MTA3Q9BTC8 594 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 EFCAB8A8MWE9 144 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 CASP7P55210 303 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 ARID5BQ14865 1188 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 PNMA1Q8ND90 353 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 PAGE5Q96GU1 130 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 FUCA2Q9BTY2 467 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 LAD1O00515 517 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 TUBBP07437 444 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 DNA2P51530 1060 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 MECOMQ03112 1051 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 GPR161Q8N6U8 529 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 ENOX1Q8TC92 643 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 OSBPL5Q9H0X9 879 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 PARP4Q9UKK3 1724 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 SMCO2A6NFE2 343 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 TXKP42681 527 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 BTDP43251 543 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 SEPT7Q16181 437 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 RGS22Q8NE09 1264 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 IQCDQ96DY2 449 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 MAGEF1Q9HAY2 307 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 GSG1L2A8MUP6 293 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 SLFN14P0C7P3 912 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 ETF1P62495 437 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 RBL2Q08999 1139 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 TBC1D8BQ0IIM8 1120 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 TCERG1LQ5VWI1 586 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 RBM43Q6ZSC3 357 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 CCDC65Q8IXS2 484 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 DESI2Q9BSY9 194 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 SH3GLB2Q9NR46 395 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 BIN2Q9UBW5 565 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 XDHP47989 1333 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 MACROD2A1Z1Q3 448 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 UBAP1LF5GYI3 381 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 HSF2BPO75031 334 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 PLEKHA8P1O95397 391 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 FDPSP14324 419 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 EZRP15311 586 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 ATP2B4P23634 1241 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 MATR3P43243 847 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS50-220ENST00000544910 MAP2K1Q02750 393 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 IQCB1Q15051 598 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 RNF187Q5TA31 235 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 ZNF658Q5TYW1 1059 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 CLEC4GQ6UXB4 293 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 ZNF34Q8IZ26 560 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 TBC1D22AQ8WUA7 517 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 DRC1Q96MC2 740 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 ZNF219Q9P2Y4 722 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 RWDD2AQ9UIY3 292 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 SSR1P43307 286 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 COPB1P53618 953 aaKnown RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 TRAF1Q13077 416 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 MCM6Q14566 821 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 INF2Q27J81 1249 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 SHC4Q6S5L8 630 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 RNF216Q9NWF9 866 aaPredicted RBP6.47□□□□□ -1.37
VPS50-220ENST00000544910 LRWD1Q9UFC0 647 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 LEMD3Q9Y2U8 911 aa6.47□□□□□ -1.37
VPS50-220ENST00000544910 CHD2O14647 1828 aaKnown RBP6.46□□□□□ -1.37
VPS50-220ENST00000544910 COL5A2P05997 1499 aaPredicted RBP6.46□□□□□ -1.37
VPS50-220ENST00000544910 CYP2D7A0A087X1C5 515 aa6.46□□□□□ -1.37
VPS50-220ENST00000544910 SPDYE3A6NKU9 549 aa6.46□□□□□ -1.37
VPS50-220ENST00000544910 WDHD1O75717 1129 aaPredicted RBP6.46□□□□□ -1.37
VPS50-220ENST00000544910 OR52Z1P0C646 297 aa6.46□□□□□ -1.37
VPS50-220ENST00000544910 EIF6P56537 245 aaKnown RBP6.46□□□□□ -1.37
VPS50-220ENST00000544910 ZC3H12CQ9C0D7 883 aaKnown RBP6.46□□□□□ -1.37
VPS50-220ENST00000544910 HPS5Q9UPZ3 1129 aa6.46□□□□□ -1.37
VPS50-220ENST00000544910 STK24Q9Y6E0 443 aa6.46□□□□□ -1.37
VPS50-220ENST00000544910 H7C1D1 291 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PRR29P0C7W0 189 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PTPREP23469 700 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 MRPL12P52815 198 aaKnown RBP6.46□□□□□ -1.38
VPS50-220ENST00000544910 WHAMMP3Q1A5X7 153 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 ERCC6LQ2NKX8 1250 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 TMTC3Q6ZXV5 915 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 SECISBP2LQ93073 1101 aaKnown RBP6.46□□□□□ -1.38
VPS50-220ENST00000544910 SLF1Q9BQI6 1058 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 GLT8D2Q9H1C3 349 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 VPS18Q9P253 973 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 MROH7-TTC4A0A0A0MT08 1334 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 ATP1A3P13637 1013 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 GBP2P32456 591 aaPredicted RBP6.46□□□□□ -1.38
VPS50-220ENST00000544910 KRT9P35527 623 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PTPN21Q16825 1174 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 REXO1Q8N1G1 1221 aaKnown RBP6.46□□□□□ -1.38
VPS50-220ENST00000544910 IGDCC4Q8TDY8 1250 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 SNX29Q8TEQ0 813 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PRM3Q9NNZ6 103 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PARP3Q9Y6F1 533 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 USP27XA6NNY8 438 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 TMED8Q6PL24 325 aaPredicted RBP6.46□□□□□ -1.38
VPS50-220ENST00000544910 NEK8Q86SG6 692 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 OXER1Q8TDS5 423 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 PANX2Q96RD6 677 aa6.46□□□□□ -1.38
VPS50-220ENST00000544910 CUEDC2Q9H467 287 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms