RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 COL4A3BPQ9Y5P4 624 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 A0A1B0GUL7 405 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 SFI1A8K8P3 1242 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 TMEM229AB2RXF0 380 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 CREB3O43889 395 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 FRAT2O75474 233 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 RAD17O75943 681 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 P4HBP07237 508 aaKnown RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 PTGIRP43119 386 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 SCNN1DP51172 638 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 TIMM10P62072 90 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 HDAC1Q13547 482 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 PLEKHG6Q3KR16 790 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 TNNI3KQ59H18 835 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 CIAPIN1Q6FI81 312 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 TMTC2Q8N394 836 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 SLC43A3Q8NBI5 491 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 TMEM87AQ8NBN3 555 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 RHPN1Q8TCX5 695 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 FAM84BQ96KN1 310 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 SPOCK3Q9BQ16 436 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 ZNF395Q9H8N7 513 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 SENP2Q9HC62 589 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 CD209Q9NNX6 404 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 GPR108Q9NPR9 543 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 GNL3LQ9NVN8 582 aaKnown RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 MAGEC2Q9UBF1 373 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-217ENST00000543205 GJA3Q9Y6H8 435 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 FPGT-TNNI3KV9GXZ4 949 aa6.2□□□□□ -1.42
CLIP1-217ENST00000543205 ZNF541Q9H0D2 1346 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 IRS2Q9Y4H2 1338 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 LTBP1Q14766 1721 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 GLTPD2A6NH11 291 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 YDJCA8MPS7 323 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 MEN1O00255 615 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 IL1R1P14778 569 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 IBSPP21815 317 aaPredicted RBP6.19□□□□□ -1.42
CLIP1-217ENST00000543205 CXCL9Q07325 125 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 MTMR3Q13615 1198 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 AACSQ86V21 672 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 GPC2Q8N158 579 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 LINC00528Q8N1L1 170 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 CLASRPQ8N2M8 674 aaKnown RBP6.19□□□□□ -1.42
CLIP1-217ENST00000543205 NME8Q8N427 588 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 XAGE2Q96GT9 111 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 TSEN34Q9BSV6 310 aaKnown RBP6.19□□□□□ -1.42
CLIP1-217ENST00000543205 LRRCC1Q9C099 1032 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 IRF2BPLQ9H1B7 796 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 IL1RAPL2Q9NP60 686 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 PCDH12Q9NPG4 1184 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 ZNF358Q9NW07 568 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 SERTAD1Q9UHV2 236 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 KDM2BQ8NHM5 1336 aa6.19□□□□□ -1.42
CLIP1-217ENST00000543205 A0A1W2PRU2 124 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 PSMD14O00487 310 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 ICMTO60725 284 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 DDNO94850 711 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 DKK1O94907 266 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 INHAP05111 366 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 IFIT2P09913 472 aaKnown RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 BMP1P13497 986 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 PAX3P23760 479 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 ADORA1P30542 326 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 ARHGAP4P98171 946 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 SETQ01105 290 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 RBL2Q08999 1139 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 CCDC158Q5M9N0 1113 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 C6orf118Q5T5N4 469 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 TTLL5Q6EMB2 1281 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 MRPL14Q6P1L8 145 aaKnown RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 GLYCTKQ8IVS8 523 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 KDF1Q8NAX2 398 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 GCC1Q96CN9 775 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 TGIF2Q9GZN2 237 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 CCDC8Q9H0W5 538 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 CCSER2Q9H7U1 834 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 KCNQ5Q9NR82 932 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 DACH1Q9UI36 760 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 DCTN4Q9UJW0 460 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 SBF1O95248 1867 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 COL4A5P29400 1685 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 BACH1O14867 736 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 BMP2P12643 396 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 TTC39AQ5SRH9 613 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 LCE2CQ5TA81 110 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 STRIP1Q5VSL9 837 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 TDRD7Q8NHU6 1098 aaKnown RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 EAF2Q96CJ1 260 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-217ENST00000543205 GMLQ99445 158 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 PRR12Q9ULL5 1215 aa6.18□□□□□ -1.42
CLIP1-217ENST00000543205 ZNF609O15014 1411 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 TOMM70O94826 608 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 IL2RAP01589 272 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 IGHDP01880 384 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 VIL1P09327 827 aaKnown RBP6.17□□□□□ -1.42
CLIP1-217ENST00000543205 PHKA1P46020 1223 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 CHAF1AQ13111 956 aaPredicted RBP6.17□□□□□ -1.42
CLIP1-217ENST00000543205 CLN3Q13286 438 aa6.17□□□□□ -1.42
CLIP1-217ENST00000543205 ANKRD45Q5TZF3 282 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms