RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TBC1D32Q96NH3 1257 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 PARK7Q99497 189 aaKnown RBP14.26□□□□□ -0.13
DDX55-210ENST00000543016 CFHR5Q9BXR6 569 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 AGXT2Q9BYV1 514 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 LY9Q9HBG7 655 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 SAGE1Q9NXZ1 904 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 HOXC10Q9NYD6 342 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 CCDC69A6NI79 296 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 DDAH1O94760 285 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 SNHG28P0DPA3 235 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 BMP3P12645 472 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 PPP2R5BQ15173 497 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 ZYXQ15942 572 aaKnown RBP14.25□□□□□ -0.13
DDX55-210ENST00000543016 NFXL1Q6ZNB6 911 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 CATSPERGQ6ZRH7 1159 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 CHST3Q7LGC8 479 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 JMYQ8N9B5 988 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 PTPN18Q99952 460 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 BEGAINQ9BUH8 593 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 THSD7BQ9C0I4 1608 aa14.25□□□□□ -0.13
DDX55-210ENST00000543016 PDHXO00330 501 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 IGF2BP3O00425 579 aaKnown RBP eCLIP14.24□□□□□ -0.13
DDX55-210ENST00000543016 FDX1P10109 184 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 IRX3P78415 501 aaPredicted RBP14.24□□□□□ -0.13
DDX55-210ENST00000543016 COG2Q14746 738 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 RABEP1Q15276 862 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 ASPRV1Q53RT3 343 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 FAM160B2Q86V87 743 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 FAM43AQ8N2R8 423 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 CHURC1Q8WUH1 139 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 ZIC5Q96T25 663 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 RPAP3Q9H6T3 665 aaPredicted RBP14.24□□□□□ -0.13
DDX55-210ENST00000543016 ZFYVE28Q9HCC9 887 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 PDRG1Q9NUG6 133 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 FEM1BQ9UK73 627 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 SLC12A7Q9Y666 1083 aa14.24□□□□□ -0.13
DDX55-210ENST00000543016 PTPRFP10586 1907 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 RAD21O60216 631 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 PDHBP11177 359 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 KIF5BP33176 963 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 GCLCP48506 637 aaPredicted RBP14.23□□□□□ -0.13
DDX55-210ENST00000543016 GNAQP50148 359 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 EVCP57679 992 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 TROAPQ12815 778 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 TREML2Q5T2D2 321 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 LBX2Q6XYB7 198 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 Q6ZUG5 572 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 SPICE1Q8N0Z3 855 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 MB21D1Q8N884 522 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 LZTS2Q9BRK4 669 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 TANGO6Q9C0B7 1094 aa14.23□□□□□ -0.13
DDX55-210ENST00000543016 LOC285556D6RIA3 1793 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 MYH4Q9Y623 1939 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 PARP1P09874 1014 aaKnown RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 SMARCA1P28370 1054 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 ZNF543Q08ER8 600 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 TAF1CQ15572 869 aaPredicted RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 NOM1Q5C9Z4 860 aaKnown RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 KIAA1755Q5JYT7 1200 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 FAM83BQ5T0W9 1011 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 BTNL9Q6UXG8 535 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 ZNF654Q8IZM8 581 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 PRPF38AQ8NAV1 312 aaKnown RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 CTCFLQ8NI51 663 aaPredicted RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 CHMP4CQ96CF2 233 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 SLF1Q9BQI6 1058 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 UPF3BQ9BZI7 483 aaKnown RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 ASCC2Q9H1I8 757 aaPredicted RBP14.22□□□□□ -0.13
DDX55-210ENST00000543016 WBP1LQ9NX94 342 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 PNMA2Q9UL42 364 aa14.22□□□□□ -0.13
DDX55-210ENST00000543016 CCDC196A0A1B0GTZ2 297 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 FLOT1O75955 427 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 NEK4P51957 841 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 STAT2P52630 851 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 GRM4Q14833 912 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 CCDC96Q2M329 555 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 SMCR8Q8TEV9 937 aaPredicted RBP14.21□□□□□ -0.13
DDX55-210ENST00000543016 BRF1Q92994 677 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 ZNF274Q96GC6 653 aaPredicted RBP14.21□□□□□ -0.13
DDX55-210ENST00000543016 TCEANC2Q96MN5 208 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 KIF2CQ99661 725 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 LRRC2Q9BYS8 371 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 RNF186Q9NXI6 227 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 PPP1R9AQ9ULJ8 1098 aa14.21□□□□□ -0.13
DDX55-210ENST00000543016 PALM3A6NDB9 673 aaPredicted RBP14.2□□□□□ -0.14
DDX55-210ENST00000543016 TMEM232C9JQI7 657 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 ZBTB43O43298 467 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 ST18O60284 1047 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 TLR2O60603 784 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 CPA1P15085 419 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 HERVK_113P62684 666 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 DGKZQ13574 1117 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 COL9A3Q14050 684 aaPredicted RBP14.2□□□□□ -0.14
DDX55-210ENST00000543016 APOA5Q6Q788 366 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 FANCBQ8NB91 859 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 P2RX7Q99572 595 aaKnown RBP14.2□□□□□ -0.14
DDX55-210ENST00000543016 GPHNQ9NQX3 736 aaPredicted RBP14.2□□□□□ -0.14
DDX55-210ENST00000543016 RBM28Q9NW13 759 aaKnown RBP14.2□□□□□ -0.14
DDX55-210ENST00000543016 ADAMTS5Q9UNA0 930 aa14.2□□□□□ -0.14
DDX55-210ENST00000543016 KLF18A0A0U1RQI7 1052 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms