RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 KIAA1755Q5JYT7 1200 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 GADL1Q6ZQY3 521 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 SNX21Q969T3 373 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 CHMP4CQ96CF2 233 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 SLKQ9H2G2 1235 aaPredicted RBP26.94■■□□□ 1.9
HOMER3-205ENST00000542541 SH2B1Q9NRF2 756 aaPredicted RBP26.94■■□□□ 1.9
HOMER3-205ENST00000542541 ISY1Q9ULR0 285 aaKnown RBP26.94■■□□□ 1.9
HOMER3-205ENST00000542541 GOLGA8AA7E2F4 631 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 GNAQP50148 359 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 NOGQ13253 232 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 CYP4F22Q6NT55 531 aa26.94■■□□□ 1.9
HOMER3-205ENST00000542541 RBM28Q9NW13 759 aaKnown RBP26.94■■□□□ 1.9
HOMER3-205ENST00000542541 CCL15-CCL14A0A0B4J2E2 113 aa26.93■■□□□ 1.9
HOMER3-205ENST00000542541 ZNF543Q08ER8 600 aa26.93■■□□□ 1.9
HOMER3-205ENST00000542541 CCL15Q16663 113 aa26.93■■□□□ 1.9
HOMER3-205ENST00000542541 CAPNS2Q96L46 248 aa26.93■■□□□ 1.9
HOMER3-205ENST00000542541 HPS5Q9UPZ3 1129 aa26.93■■□□□ 1.9
HOMER3-205ENST00000542541 CD2BP2O95400 341 aaKnown RBP26.92■■□□□ 1.9
HOMER3-205ENST00000542541 RXRAP19793 462 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 GRM1Q13255 1194 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 PABPC4Q13310 644 aaKnown RBP eCLIP26.92■■□□□ 1.9
HOMER3-205ENST00000542541 DGKZQ13574 1117 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 ME3Q16798 604 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 RTN1Q16799 776 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 FAM83BQ5T0W9 1011 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 RAB11FIP4Q86YS3 637 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 AGTPBP1Q9UPW5 1226 aa26.92■■□□□ 1.9
HOMER3-205ENST00000542541 PALM3A6NDB9 673 aaPredicted RBP26.91■■□□□ 1.9
HOMER3-205ENST00000542541 DHX16O60231 1041 aaKnown RBP26.91■■□□□ 1.9
HOMER3-205ENST00000542541 PFKFB2O60825 505 aa26.91■■□□□ 1.9
HOMER3-205ENST00000542541 STK3Q13188 491 aa26.91■■□□□ 1.9
HOMER3-205ENST00000542541 CCDC144CPQ8IYA2 1237 aa26.91■■□□□ 1.9
HOMER3-205ENST00000542541 NUP88Q99567 741 aaPredicted RBP26.91■■□□□ 1.9
HOMER3-205ENST00000542541 LZTS2Q9BRK4 669 aa26.91■■□□□ 1.9
HOMER3-205ENST00000542541 RPAP3Q9H6T3 665 aaPredicted RBP26.91■■□□□ 1.9
HOMER3-205ENST00000542541 CEP350Q5VT06 3117 aa26.91■■□□□ 1.9
HOMER3-205ENST00000542541 TESPA1A2RU30 521 aaPredicted RBP26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L15C9J2P7 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L13C9JLJ4 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L11C9JVI0 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L18D6R9N7 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L22D6RA61 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L17D6RBQ6 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L19D6RCP7 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L20D6RJB6 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 USP17L24Q0WX57 530 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 SREBF2Q12772 1141 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 KCTD1Q719H9 257 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 HSCBQ8IWL3 235 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 CHURC1Q8WUH1 139 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 TANGO6Q9C0B7 1094 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 MAD2L2Q9UI95 211 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 FEM1BQ9UK73 627 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 NID2Q14112 1375 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 TMEM232C9JQI7 657 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 HOXA7P31268 230 aaPredicted RBP26.9■■□□□ 1.9
HOMER3-205ENST00000542541 CCT2P78371 535 aaKnown RBP26.9■■□□□ 1.9
HOMER3-205ENST00000542541 MOGSQ13724 837 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 REM2Q8IYK8 340 aaPredicted RBP26.9■■□□□ 1.9
HOMER3-205ENST00000542541 BRI3BPQ8WY22 251 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 GPCPD1Q9NPB8 672 aa26.9■■□□□ 1.9
HOMER3-205ENST00000542541 FRMPD2Q68DX3 1309 aaPredicted RBP26.89■■□□□ 1.9
HOMER3-205ENST00000542541 KLRF2D3W0D1 207 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 PLA2G6O60733 806 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 GOLGA8HP0CJ92 632 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 STAT2P52630 851 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 IKQ13123 557 aaPredicted RBP26.89■■□□□ 1.9
HOMER3-205ENST00000542541 RASGRP2Q7LDG7 609 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 FAM160B2Q86V87 743 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 TSHZ2Q9NRE2 1034 aa26.89■■□□□ 1.9
HOMER3-205ENST00000542541 TREML2Q5T2D2 321 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 CPLX2Q6PUV4 134 aaKnown RBP26.88■■□□□ 1.89
HOMER3-205ENST00000542541 CATSPERGQ6ZRH7 1159 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 ANKRD23Q86SG2 305 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 STAG2Q8N3U4 1231 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 TMX3Q96JJ7 454 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 SLC45A1Q9Y2W3 748 aa26.88■■□□□ 1.89
HOMER3-205ENST00000542541 CPLX1O14810 134 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 SMARCA1P28370 1054 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 OTUD7BQ6GQQ9 843 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 GTF3C6Q969F1 213 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 WDR33Q9C0J8 1336 aaKnown RBP26.87■■□□□ 1.89
HOMER3-205ENST00000542541 K7ELQ4 463 aaPredicted RBP26.87■■□□□ 1.89
HOMER3-205ENST00000542541 FLOT1O75955 427 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 LARGE1O95461 756 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 OSBPP22059 807 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 KIF23Q02241 960 aaPredicted RBP26.87■■□□□ 1.89
HOMER3-205ENST00000542541 SCRN1Q12765 414 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 GPAT2Q6NUI2 795 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 BTNL9Q6UXG8 535 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 FAM217BQ9NTX9 383 aaPredicted RBP26.87■■□□□ 1.89
HOMER3-205ENST00000542541 HOXC10Q9NYD6 342 aa26.87■■□□□ 1.89
HOMER3-205ENST00000542541 CDC27P30260 824 aa26.86■■□□□ 1.89
HOMER3-205ENST00000542541 ADD1P35611 737 aaKnown RBP26.86■■□□□ 1.89
HOMER3-205ENST00000542541 IRX3P78415 501 aaPredicted RBP26.86■■□□□ 1.89
HOMER3-205ENST00000542541 COG2Q14746 738 aa26.86■■□□□ 1.89
HOMER3-205ENST00000542541 TMTC3Q6ZXV5 915 aa26.86■■□□□ 1.89
HOMER3-205ENST00000542541 PRPF38AQ8NAV1 312 aaKnown RBP26.86■■□□□ 1.89
HOMER3-205ENST00000542541 NCOA5Q9HCD5 579 aaKnown RBP26.86■■□□□ 1.89
HOMER3-205ENST00000542541 ZCCHC17Q9NP64 241 aaKnown RBP26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms