RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RMDN2Q96LZ7 410 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 AGBL1Q96MI9 1066 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 FAM107BQ9H098 131 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.51□□□□□ -0.41
CDH3-203ENST00000542274 ZNF652Q9Y2D9 606 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 FOXP2O15409 715 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 F13A1P00488 732 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 MCAMP43121 646 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 FOSBP53539 338 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 FXNQ16595 210 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 TMCO4Q5TGY1 634 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 CCDC80Q76M96 950 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 MYOCDQ8IZQ8 938 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 SH3BP5O60239 455 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 TPPPO94811 219 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 KCNA2P16389 499 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 PTK7Q13308 1070 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 WASHC4Q2M389 1173 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 PARP10Q53GL7 1025 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 WLSQ5T9L3 541 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 BRF1Q92994 677 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 PUS7LQ9H0K6 701 aaKnown RBP12.5□□□□□ -0.41
CDH3-203ENST00000542274 GPCPD1Q9NPB8 672 aa12.5□□□□□ -0.41
CDH3-203ENST00000542274 GPHNQ9NQX3 736 aaPredicted RBP12.5□□□□□ -0.41
CDH3-203ENST00000542274 FBXO9Q9UK97 447 aaPredicted RBP12.5□□□□□ -0.41
CDH3-203ENST00000542274 OPA1O60313 960 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 ZPR1O75312 459 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 CCDC158Q5M9N0 1113 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 RC3H1Q5TC82 1133 aaKnown RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 ZNF772Q68DY9 489 aaPredicted RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 ILDR1Q86SU0 546 aaPredicted RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 OR8K1Q8NGG5 319 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 DNAAF2Q9NVR5 837 aaKnown RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 ARGLU1Q9NWB6 273 aaPredicted RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 NARFQ9UHQ1 456 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 RNF113AO15541 343 aaKnown RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 ADCY1Q08828 1119 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 TPD52L1Q16890 204 aaPredicted RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 SOGA3Q5TF21 947 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 PLEKHA4Q9H4M7 779 aa12.49□□□□□ -0.41
CDH3-203ENST00000542274 SH2B1Q9NRF2 756 aaPredicted RBP12.49□□□□□ -0.41
CDH3-203ENST00000542274 WTIPA6NIX2 430 aaPredicted RBP12.48□□□□□ -0.41
CDH3-203ENST00000542274 EIF3FO00303 357 aaPredicted RBP12.48□□□□□ -0.41
CDH3-203ENST00000542274 PHKA1P46020 1223 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 NSUN2Q08J23 767 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDH3-203ENST00000542274 KBTBD12Q3ZCT8 623 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 LARP1BQ659C4 914 aaKnown RBP12.48□□□□□ -0.41
CDH3-203ENST00000542274 OLFML1Q6UWY5 402 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 MICALCLQ6ZW33 695 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 HOOK3Q86VS8 718 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 NKX2-3Q8TAU0 364 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 ZSCAN31Q96LW9 406 aaPredicted RBP12.48□□□□□ -0.41
CDH3-203ENST00000542274 HMG20BQ9P0W2 317 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 DENND2AQ9ULE3 1009 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 MYO6Q9UM54 1294 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 U3KPZ7 1027 aaPredicted RBP12.48□□□□□ -0.41
CDH3-203ENST00000542274 ABCC12Q96J65 1359 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 LAMB2P55268 1798 aa12.48□□□□□ -0.41
CDH3-203ENST00000542274 ATP8B1O43520 1251 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 SASH3O75995 380 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 SEC31AO94979 1220 aaKnown RBP12.47□□□□□ -0.41
CDH3-203ENST00000542274 RFC4P35249 363 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 APOBRQ0VD83 1088 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 LRRC23Q53EV4 343 aaPredicted RBP12.47□□□□□ -0.41
CDH3-203ENST00000542274 RAB11FIP4Q86YS3 637 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 VGLL2Q8N8G2 317 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 USP33Q8TEY7 942 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 LMBR1Q8WVP7 490 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 UBR3Q6ZT12 1888 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.47□□□□□ -0.41
CDH3-203ENST00000542274 ZEB2O60315 1214 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 KLHL10Q6JEL2 608 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 NCOA5Q9HCD5 579 aaKnown RBP12.47□□□□□ -0.41
CDH3-203ENST00000542274 HELLSQ9NRZ9 838 aa12.47□□□□□ -0.41
CDH3-203ENST00000542274 E7EWF7 191 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 TRAPPC3LQ5T215 181 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 CCDC65Q8IXS2 484 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 PROM2Q8N271 834 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 ATP11CQ8NB49 1132 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 ATP8A1Q9Y2Q0 1164 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 RFX7Q2KHR2 1363 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 ARHGAP29Q52LW3 1261 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 RCSD1Q6JBY9 416 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 MFN1Q8IWA4 741 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 SETDB2Q96T68 719 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 TRPV5Q9NQA5 729 aa12.46□□□□□ -0.41
CDH3-203ENST00000542274 PIH1D3Q9NQM4 214 aaKnown RBP12.46□□□□□ -0.41
CDH3-203ENST00000542274 RGS17Q9UGC6 210 aaPredicted RBP12.46□□□□□ -0.41
CDH3-203ENST00000542274 BARX2Q9UMQ3 279 aaPredicted RBP12.46□□□□□ -0.41
CDH3-203ENST00000542274 GOLGA6L19H0YKK7 550 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 BOLA2-SMG1P6H3BVE0 249 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 PDE8BO95263 885 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 RXRBP28702 533 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 CWF19L1Q69YN2 538 aaKnown RBP12.46□□□□□ -0.42
CDH3-203ENST00000542274 FAAH2Q6GMR7 532 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 ANKRD13AQ8IZ07 590 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 MIPOL1Q8TD10 442 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 CLIP3Q96DZ5 547 aa12.46□□□□□ -0.42
CDH3-203ENST00000542274 IDH1O75874 414 aaKnown RBP12.45□□□□□ -0.42
CDH3-203ENST00000542274 VDRP11473 427 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms