RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 EYSQ5T1H1 3165 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 TRIM43BA6NCK2 446 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 AKR1B1P15121 316 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 RIOX2Q8IUF8 465 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 TRIM43Q96BQ3 446 aaPredicted RBP32.33■■■□□ 2.77
CHFR-218ENST00000540963 DYNLL2Q96FJ2 89 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 DNAJC2Q99543 621 aaKnown RBP32.33■■■□□ 2.77
CHFR-218ENST00000540963 XPNPEP3Q9NQH7 507 aa32.33■■■□□ 2.77
CHFR-218ENST00000540963 TMEM265A0A087WTH1 108 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 COPB2P35606 906 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 RNF180Q86T96 592 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 AMOTL1Q8IY63 956 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 FERMT2Q96AC1 680 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 MMP19Q99542 508 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 ARMT1Q9H993 441 aa32.32■■■□□ 2.76
CHFR-218ENST00000540963 IFIT2P09913 472 aaKnown RBP32.31■■■□□ 2.76
CHFR-218ENST00000540963 TLE2Q04725 743 aa32.31■■■□□ 2.76
CHFR-218ENST00000540963 C12orf60Q5U649 245 aa32.31■■■□□ 2.76
CHFR-218ENST00000540963 SH3RF1Q7Z6J0 888 aa32.31■■■□□ 2.76
CHFR-218ENST00000540963 TINF2Q9BSI4 451 aa32.31■■■□□ 2.76
CHFR-218ENST00000540963 ADD2P35612 726 aa32.3■■■□□ 2.76
CHFR-218ENST00000540963 KCTD2Q14681 263 aa32.3■■■□□ 2.76
CHFR-218ENST00000540963 DIEXFQ68CQ4 756 aaKnown RBP32.3■■■□□ 2.76
CHFR-218ENST00000540963 MAFAQ8NHW3 353 aaPredicted RBP32.3■■■□□ 2.76
CHFR-218ENST00000540963 KANSL2Q9H9L4 492 aa32.3■■■□□ 2.76
CHFR-218ENST00000540963 CLTBP09497 229 aa32.29■■■□□ 2.76
CHFR-218ENST00000540963 CDK8P49336 464 aa32.29■■■□□ 2.76
CHFR-218ENST00000540963 ZNF792Q3KQV3 632 aa32.29■■■□□ 2.76
CHFR-218ENST00000540963 C16orf86Q6ZW13 317 aa32.29■■■□□ 2.76
CHFR-218ENST00000540963 CLEC10AQ8IUN9 316 aa32.29■■■□□ 2.76
CHFR-218ENST00000540963 RPAP2Q8IXW5 612 aaPredicted RBP32.29■■■□□ 2.76
CHFR-218ENST00000540963 DDX24Q9GZR7 859 aaKnown RBP eCLIP32.29■■■□□ 2.76
CHFR-218ENST00000540963 KIAA0355O15063 1070 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 DDRGK1Q96HY6 314 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 TTYH1Q9H313 450 aaPredicted RBP32.28■■■□□ 2.76
CHFR-218ENST00000540963 GOPCQ9HD26 462 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 PAG1Q9NWQ8 432 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 MYH7P12883 1935 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 PRUNE2Q8WUY3 3088 aa32.28■■■□□ 2.76
CHFR-218ENST00000540963 VWA5AO00534 786 aa32.27■■■□□ 2.76
CHFR-218ENST00000540963 HMMRO75330 724 aa32.27■■■□□ 2.76
CHFR-218ENST00000540963 MBD4O95243 580 aa32.27■■■□□ 2.76
CHFR-218ENST00000540963 STAT3P40763 770 aa32.27■■■□□ 2.76
CHFR-218ENST00000540963 MSL3Q8N5Y2 521 aaKnown RBP32.27■■■□□ 2.76
CHFR-218ENST00000540963 TSEN34Q9BSV6 310 aaKnown RBP32.27■■■□□ 2.76
CHFR-218ENST00000540963 PPP1R9AQ9ULJ8 1098 aa32.27■■■□□ 2.76
CHFR-218ENST00000540963 VCANP13611 3396 aa32.26■■■□□ 2.76
CHFR-218ENST00000540963 PRKAB2O43741 272 aa32.26■■■□□ 2.75
CHFR-218ENST00000540963 RAB11FIP3O75154 756 aa32.26■■■□□ 2.75
CHFR-218ENST00000540963 EEF2P13639 858 aaKnown RBP32.26■■■□□ 2.75
CHFR-218ENST00000540963 AKR1A1P14550 325 aa32.26■■■□□ 2.75
CHFR-218ENST00000540963 ZNF214Q9UL59 606 aaPredicted RBP32.26■■■□□ 2.75
CHFR-218ENST00000540963 USP17L12C9JPN9 530 aa32.25■■■□□ 2.75
CHFR-218ENST00000540963 USP17L21D6R901 530 aa32.25■■■□□ 2.75
CHFR-218ENST00000540963 MS4A1P11836 297 aa32.25■■■□□ 2.75
CHFR-218ENST00000540963 TOX2Q96NM4 488 aa32.25■■■□□ 2.75
CHFR-218ENST00000540963 A0A1W2PQ45 241 aaPredicted RBP32.24■■■□□ 2.75
CHFR-218ENST00000540963 A0A1W2PQY0 241 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 PGK2P07205 417 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 ZNF865P0CJ78 1059 aaPredicted RBP32.24■■■□□ 2.75
CHFR-218ENST00000540963 ATP5JP18859 108 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 UBE3CQ15386 1083 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 SAMD1Q6SPF0 538 aaPredicted RBP32.24■■■□□ 2.75
CHFR-218ENST00000540963 PANK1Q8TE04 598 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 RNPC3Q96LT9 517 aaKnown RBP32.24■■■□□ 2.75
CHFR-218ENST00000540963 FBXO28Q9NVF7 368 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 CNPY2Q9Y2B0 182 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 ZBED9Q6R2W3 1325 aa32.24■■■□□ 2.75
CHFR-218ENST00000540963 CDH23Q9H251 3354 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 PGK1P00558 417 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 RAG1P15918 1043 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 ITGB8P26012 769 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 ANKRD33Q7Z3H0 272 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 REPS2Q8NFH8 660 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 MYLIPQ8WY64 445 aa32.23■■■□□ 2.75
CHFR-218ENST00000540963 HAUS7Q99871 368 aa32.22■■■□□ 2.75
CHFR-218ENST00000540963 GREB1LQ9C091 1923 aaPredicted RBP32.22■■■□□ 2.75
CHFR-218ENST00000540963 ADAMTS4O75173 837 aa32.21■■■□□ 2.75
CHFR-218ENST00000540963 FOSL2P15408 326 aa32.21■■■□□ 2.75
CHFR-218ENST00000540963 HNRNPUQ00839 825 aaKnown RBP eCLIP32.21■■■□□ 2.75
CHFR-218ENST00000540963 FPGSQ05932 587 aa32.21■■■□□ 2.75
CHFR-218ENST00000540963 NUP133Q8WUM0 1156 aa32.21■■■□□ 2.75
CHFR-218ENST00000540963 BOLA2Q9H3K6 86 aa32.21■■■□□ 2.75
CHFR-218ENST00000540963 CYP2D7A0A087X1C5 515 aa32.2■■■□□ 2.75
CHFR-218ENST00000540963 TAL1P17542 331 aaPredicted RBP32.2■■■□□ 2.75
CHFR-218ENST00000540963 TMEM39AQ9NV64 488 aa32.2■■■□□ 2.75
CHFR-218ENST00000540963 SYNGAP1Q96PV0 1343 aa32.2■■■□□ 2.74
CHFR-218ENST00000540963 MOXD2PA6NHM9 499 aa32.19■■■□□ 2.74
CHFR-218ENST00000540963 APBB1O00213 710 aa32.19■■■□□ 2.74
CHFR-218ENST00000540963 PQBP1O60828 265 aaKnown RBP32.19■■■□□ 2.74
CHFR-218ENST00000540963 ZSCAN25Q6NSZ9 544 aa32.19■■■□□ 2.74
CHFR-218ENST00000540963 TEX13BQ9BXU2 312 aa32.19■■■□□ 2.74
CHFR-218ENST00000540963 DCDC2CA8MYV0 355 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 SMIM22K7EJ46 135 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 EPHB4P54760 987 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 SLFNL1Q499Z3 407 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 FAM83BQ5T0W9 1011 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 CTR9Q6PD62 1173 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 MAMDC4Q6UXC1 1216 aa32.18■■■□□ 2.74
CHFR-218ENST00000540963 ARPP21Q9UBL0 812 aaPredicted RBP32.18■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms