RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PLA2G6O60733 806 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 VCAM1P19320 739 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 SLC1A4P43007 532 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 GCLCP48506 637 aaPredicted RBP20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 SEC23AQ15436 765 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 SHROOM1Q2M3G4 852 aaPredicted RBP20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 SLFN13Q68D06 897 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 CYB5R4Q7L1T6 521 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 SGMS1Q86VZ5 419 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 PNMA1Q8ND90 353 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 IGDCC4Q8TDY8 1250 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 PNMA2Q9UL42 364 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 LOC285556D6RIA3 1793 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 PTPRFP10586 1907 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 MYH4Q9Y623 1939 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 RAD21O60216 631 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 NMT2O60551 498 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 BMP3P12645 472 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 RPS6KB1P23443 525 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 MOGSQ13724 837 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 COG2Q14746 738 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 ZYXQ15942 572 aaKnown RBP20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 ADCK5Q3MIX3 580 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 NOM1Q5C9Z4 860 aaKnown RBP20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 NFXL1Q6ZNB6 911 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 CATSPERGQ6ZRH7 1159 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 FAM160B2Q86V87 743 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 MB21D1Q8N884 522 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 CHMP4CQ96CF2 233 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 ZKSCAN3Q9BRR0 538 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 ALDH8A1Q9H2A2 487 aaPredicted RBP20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 FEM1BQ9UK73 627 aa20.49■□□□□ 0.87
CLSTN3-210ENST00000540931 DDAH1O94760 285 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 SEC24BO95487 1268 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 NDUFB10O96000 172 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 KIF5BP33176 963 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 TAF1CQ15572 869 aaPredicted RBP20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 ASPRV1Q53RT3 343 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 GPAT2Q6NUI2 795 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 SMCR8Q8TEV9 937 aaPredicted RBP20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 RPAP3Q9H6T3 665 aaPredicted RBP20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 TAF6LQ9Y6J9 622 aa20.48■□□□□ 0.87
CLSTN3-210ENST00000540931 SH2B2O14492 632 aaPredicted RBP20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 GNAQP50148 359 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 SOX10P56693 466 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 ANTXR2P58335 489 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 LBX2Q6XYB7 198 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 CLEC10AQ8IUN9 316 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 LRRC47Q8N1G4 583 aaKnown RBP20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 PRPF38AQ8NAV1 312 aaKnown RBP20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 PTPN18Q99952 460 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 TANGO6Q9C0B7 1094 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 SLC12A7Q9Y666 1083 aa20.47■□□□□ 0.87
CLSTN3-210ENST00000540931 IGF2BP3O00425 579 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 SNHG28P0DPA3 235 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 STAT2P52630 851 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 ARHGEF6Q15052 776 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 FAM43AQ8N2R8 423 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 LZTS2Q9BRK4 669 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 AGXT2Q9BYV1 514 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 LY9Q9HBG7 655 aa20.46■□□□□ 0.87
CLSTN3-210ENST00000540931 CCDC196A0A1B0GTZ2 297 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 TLR2O60603 784 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 PARP1P09874 1014 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 PDHBP11177 359 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 TRAF1Q13077 416 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 CTU1Q7Z7A3 348 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 SPICE1Q8N0Z3 855 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 CTCFLQ8NI51 663 aaPredicted RBP20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 ASCC2Q9H1I8 757 aaPredicted RBP20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 PDRG1Q9NUG6 133 aa20.45■□□□□ 0.86
CLSTN3-210ENST00000540931 FLOT1O75955 427 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 SMARCA1P28370 1054 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 RABEP1Q15276 862 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 TREML2Q5T2D2 321 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 CHST3Q7LGC8 479 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 TBC1D32Q96NH3 1257 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 SLF1Q9BQI6 1058 aa20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 CTDP1Q9Y5B0 961 aaPredicted RBP20.44■□□□□ 0.86
CLSTN3-210ENST00000540931 COPB2P35606 906 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 CCNA1P78396 465 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 ZNF543Q08ER8 600 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 IKQ13123 557 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 CCDC96Q2M329 555 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 FAM83BQ5T0W9 1011 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 BTNL9Q6UXG8 535 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 Q6ZUG5 572 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 ZNF654Q8IZM8 581 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 RBM28Q9NW13 759 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 ISY1Q9ULR0 285 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 RABGAP1Q9Y3P9 1069 aa20.43■□□□□ 0.86
CLSTN3-210ENST00000540931 ST18O60284 1047 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 DSG3P32926 999 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 EVCP57679 992 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 HERVK_113P62684 666 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 TROAPQ12815 778 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 PPP1R9AQ9ULJ8 1098 aa20.42■□□□□ 0.86
CLSTN3-210ENST00000540931 TMEM232C9JQI7 657 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 ZBTB43O43298 467 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms