RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	GMCL1P1	Q8NEA9	526 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	APBA2	Q99767	749 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	RNF208	Q9H0X6	261 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	PPP1R9A	Q9ULJ8	1098 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	ADAMTS5	Q9UNA0	930 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	PLXNB2	O15031	1838 aa		14.01	□□□□□ -0.17
SYNE1-238	ENST00000540663	PDE4DIP	Q5VU43	2346 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	TSPY2	A6NKD2	308 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	STRN	O43815	780 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	RAD21	O60216	631 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	SLC25A27	O95847	323 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	ZKSCAN1	P17029	563 aa	Predicted RBP	14	□□□□□ -0.17
SYNE1-238	ENST00000540663	PTPRE	P23469	700 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	COPB2	P35606	906 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	GJA8	P48165	433 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	MAP2K5	Q13163	448 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	FAM47A	Q5JRC9	791 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	FAM83B	Q5T0W9	1011 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	WDR78	Q5VTH9	848 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	CWC27	Q6UX04	472 aa	Known RBP	14	□□□□□ -0.17
SYNE1-238	ENST00000540663	ATG4C	Q96DT6	458 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	MOV10L1	Q9BXT6	1211 aa	Known RBP	14	□□□□□ -0.17
SYNE1-238	ENST00000540663	UNC93B1	Q9H1C4	597 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	MROH8	Q9H579	483 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	MKI67	P46013	3256 aa	Known RBP	14	□□□□□ -0.17
SYNE1-238	ENST00000540663	MYH4	Q9Y623	1939 aa		14	□□□□□ -0.17
SYNE1-238	ENST00000540663	PARP14	Q460N5	1801 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	RANBP6	O60518	1105 aa	Known RBP	13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	HOXC6	P09630	235 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	CYP2B6	P20813	491 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	GRB14	Q14449	540 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	ABRA	Q8N0Z2	381 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	SLF1	Q9BQI6	1058 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	DSCC1	Q9BVC3	393 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	RNF41	Q9H4P4	317 aa	Predicted RBP	13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	PAK6	Q9NQU5	681 aa	Predicted RBP	13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	FBXO28	Q9NVF7	368 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	ZNF236	Q9UL36	1845 aa		13.99	□□□□□ -0.17
SYNE1-238	ENST00000540663	RAD50	Q92878	1312 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	VWA5A	O00534	786 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	GSPT1	P15170	499 aa	Known RBP	13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	NOV	P48745	357 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	TMEM132B	Q14DG7	1078 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	AKNAD1	Q5T1N1	836 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	PRPF38A	Q8NAV1	312 aa	Known RBP	13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	STAG1	Q8WVM7	1258 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	TRIB2	Q92519	343 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	GMCL1	Q96IK5	515 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	CTNNA3	Q9UI47	895 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	FEM1B	Q9UK73	627 aa		13.98	□□□□□ -0.17
SYNE1-238	ENST00000540663	RPTOR	Q8N122	1335 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	ZNF213	O14771	459 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	SGPL1	O95470	568 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	FDX1	P10109	184 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	ERCC3	P19447	782 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	PLS1	Q14651	629 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	MAP3K21	Q5TCX8	1036 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	SLFN13	Q68D06	897 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	MFSD6	Q6ZSS7	791 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	RIOX2	Q8IUF8	465 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	LRRC47	Q8N1G4	583 aa	Known RBP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	U2AF1L4	Q8WU68	220 aa	Known RBP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	RUFY2	Q8WXA3	655 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	SHISA4	Q96DD7	197 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	NUP88	Q99567	741 aa	Predicted RBP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	HMX1	Q9NP08	348 aa	Predicted RBP	13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	TOMM22	Q9NS69	142 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	TCP11L1	Q9NUJ3	509 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	SLC5A4	Q9NY91	659 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	STX8	Q9UNK0	236 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	LAMA4	Q16363	1823 aa		13.97	□□□□□ -0.17
SYNE1-238	ENST00000540663	BMP3	P12645	472 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	STAT3	P40763	770 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	HAND2	P61296	217 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	MFSD14C	Q5VZR4	134 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	FAM160B2	Q86V87	743 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	NCAPG2	Q86XI2	1143 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	REPS2	Q8NFH8	660 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	CHURC1	Q8WUH1	139 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	TEX13B	Q9BXU2	312 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	INCENP	Q9NQS7	918 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	IL17RB	Q9NRM6	502 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	ZNF214	Q9UL59	606 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	TACC3	Q9Y6A5	838 aa		13.96	□□□□□ -0.17
SYNE1-238	ENST00000540663	ATP2A1	O14983	1001 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	PLA2G6	O60733	806 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	ZBED4	O75132	1171 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	FCER1A	P12319	257 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	PRKAR2A	P13861	404 aa	Known RBP	13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	ADORA2A	P29274	412 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	SLC1A4	P43007	532 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	IMMT	Q16891	758 aa	Known RBP	13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	RRP12	Q5JTH9	1297 aa	Known RBP	13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	DPP9	Q86TI2	863 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	TBC1D10C	Q8IV04	446 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	ESR2	Q92731	530 aa		13.95	□□□□□ -0.18
SYNE1-238	ENST00000540663	DEFB118	Q96PH6	123 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms