RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GRAPQ13588 217 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 BLIDQ8IZY5 108 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 GRAPLQ8TC17 118 aaPredicted RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 TNFRSF25Q93038 417 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 CD209Q9NNX6 404 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 ZHX1Q9UKY1 873 aaPredicted RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 MYH6P13533 1939 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 KLRF2D3W0D1 207 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 SERPINB2P05120 415 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 PFKFB3Q16875 520 aaPredicted RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 SEPT12Q8IYM1 358 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 NOL10Q9BSC4 688 aaKnown RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 GPCPD1Q9NPB8 672 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 RBM28Q9NW13 759 aaKnown RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 IMPACTQ9P2X3 320 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 ARPP21Q9UBL0 812 aaPredicted RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 MAD2L2Q9UI95 211 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 SYNRGQ9UMZ2 1314 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 KMT5BQ4FZB7 885 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 TC2NQ8N9U0 490 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 LRRC15Q8TF66 581 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 COA7Q96BR5 231 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 NKRFO15226 690 aaKnown RBP eCLIP19.18■□□□□ 0.66
USP28-208ENST00000540438 FBXO38Q6PIJ6 1188 aa19.18■□□□□ 0.66
USP28-208ENST00000540438 EYA3Q99504 573 aa19.18■□□□□ 0.66
USP28-208ENST00000540438 FAM237AA0A1B0GTK4 181 aa19.18■□□□□ 0.66
USP28-208ENST00000540438 USP17L5A8MUK1 530 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 TAL1P17542 331 aaPredicted RBP19.17■□□□□ 0.66
USP28-208ENST00000540438 RASA1P20936 1047 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 CASP14P31944 242 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 SLC16A2P36021 539 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 SPECC1LQ69YQ0 1117 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 IGSF22Q8N9C0 903 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 ANKRD7Q92527 254 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 CEP95Q96GE4 821 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 CARD6Q9BX69 1037 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 PPP2R2CQ9Y2T4 447 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 CBFA2T2O43439 604 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 STAT6P42226 847 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 CDK8P49336 464 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 PMS1P54277 932 aaKnown RBP19.17■□□□□ 0.66
USP28-208ENST00000540438 NAPAP54920 295 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 SAMD1Q6SPF0 538 aaPredicted RBP19.17■□□□□ 0.66
USP28-208ENST00000540438 MLKLQ8NB16 471 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 PIGSQ96S52 555 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 DOCK2Q92608 1830 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 PPP1R3GB7ZBB8 358 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 ORC4O43929 436 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 DDAH1O94760 285 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 TCP10Q12799 353 aa19.17■□□□□ 0.66
USP28-208ENST00000540438 MRPL44Q9H9J2 332 aaKnown RBP19.17■□□□□ 0.66
USP28-208ENST00000540438 DUOX1Q9NRD9 1551 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 NRDCO43847 1150 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 CCNT1O60563 726 aaKnown RBP19.16■□□□□ 0.66
USP28-208ENST00000540438 TMEM139Q8IV31 216 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 REXO1L1PQ8IX06 675 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 CALM1P0DP23 149 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 CALM2P0DP24 149 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 CALM3P0DP25 149 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 ZNF18P17022 549 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 TECP42680 631 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 SNAP25P60880 206 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 ATP2C1P98194 919 aaPredicted RBP19.16■□□□□ 0.66
USP28-208ENST00000540438 ZNF804AQ7Z570 1209 aa19.16■□□□□ 0.66
USP28-208ENST00000540438 MPHOSPH10O00566 681 aaKnown RBP19.15■□□□□ 0.66
USP28-208ENST00000540438 GYS1P13807 737 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 FXR1P51114 621 aaKnown RBP eCLIP19.15■□□□□ 0.66
USP28-208ENST00000540438 PCDHA6Q9UN73 950 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 PCDHA8Q9Y5H6 950 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 FAM170AA1A519 330 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 N4BP3O15049 544 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 SLU7O95391 586 aaKnown RBP19.15■□□□□ 0.66
USP28-208ENST00000540438 BAG3O95817 575 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 ACRBPQ8NEB7 543 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 ENOX1Q8TC92 643 aaKnown RBP19.15■□□□□ 0.66
USP28-208ENST00000540438 MAP7D2Q96T17 732 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 GGA1Q9UJY5 639 aa19.15■□□□□ 0.66
USP28-208ENST00000540438 KIF5BP33176 963 aa19.14■□□□□ 0.66
USP28-208ENST00000540438 DDR1Q08345 913 aa19.14■□□□□ 0.66
USP28-208ENST00000540438 WDR66Q8TBY9 1149 aa19.14■□□□□ 0.66
USP28-208ENST00000540438 RTFDC1Q9BY42 306 aaPredicted RBP19.14■□□□□ 0.66
USP28-208ENST00000540438 MKRN1Q9UHC7 482 aaKnown RBP19.14■□□□□ 0.66
USP28-208ENST00000540438 BCORQ6W2J9 1755 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 PRCPP42785 496 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 TRIM65Q6PJ69 517 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 RAD9BQ6WBX8 426 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 IQUBQ8NA54 791 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 GJD4Q96KN9 370 aaPredicted RBP19.14■□□□□ 0.65
USP28-208ENST00000540438 FGRP09769 529 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 TXKP42681 527 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 SPTY2D1Q68D10 685 aaPredicted RBP19.14■□□□□ 0.65
USP28-208ENST00000540438 KLHL34Q8N239 644 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 NELFBQ8WX92 580 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 POLD4Q9HCU8 107 aa19.14■□□□□ 0.65
USP28-208ENST00000540438 UBA7P41226 1012 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 ETF1P62495 437 aaKnown RBP19.13■□□□□ 0.65
USP28-208ENST00000540438 ARHGAP29Q52LW3 1261 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 TTBK2Q6IQ55 1244 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 AMOTL1Q8IY63 956 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 ZNF579Q8NAF0 562 aaKnown RBP19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms