RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SH2D4AQ9H788 454 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 AFG3L2Q9Y4W6 797 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 NID2Q14112 1375 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 USP17L10C9JJH3 530 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 RAD21O60216 631 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SNHG28P0DPA3 235 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ADD1P35611 737 aaKnown RBP22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 GRM4Q14833 912 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 RTN1Q16799 776 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 OPTNQ96CV9 577 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 MAP3K14Q99558 947 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 FEZ1Q99689 392 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 KIAA1683Q9H0B3 1180 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 VCPKMTQ9H867 229 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ATAD5Q96QE3 1844 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 TRIM75PA6NK02 468 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CA12O43570 354 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 DTNBO60941 627 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 NDUFB10O96000 172 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 MTMR2Q13614 643 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SLFN13Q68D06 897 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 USP17L2Q6R6M4 530 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 TNS4Q8IZW8 715 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 STAG2Q8N3U4 1231 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 OTUD5Q96G74 571 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 WNK4Q96J92 1243 aa22.06■■□□□ 1.12
TNFRSF1A-213ENST00000540022 BACE1P56817 501 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PPATQ06203 517 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 DGKZQ13574 1117 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SPICE1Q8N0Z3 855 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CTCFLQ8NI51 663 aaPredicted RBP22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 GOPCQ9HD26 462 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 MAD2L2Q9UI95 211 aa22.05■■□□□ 1.12
TNFRSF1A-213ENST00000540022 GOLGA8HP0CJ92 632 aa22.04■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SPRYD7Q5W111 196 aa22.04■■□□□ 1.12
TNFRSF1A-213ENST00000540022 FRMPD2Q68DX3 1309 aaPredicted RBP22.04■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PALM3A6NDB9 673 aaPredicted RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 IRF6O14896 467 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CTDNEP1O95476 244 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PARP1P09874 1014 aaKnown RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 KIF5BP33176 963 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ZNF543Q08ER8 600 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PPP2R5BQ15173 497 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 NTRK3Q16288 839 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CMTR1Q8N1G2 835 aaKnown RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 GMCL1Q96IK5 515 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 IPO9Q96P70 1041 aaKnown RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 NUP88Q99567 741 aaPredicted RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 EMILIN3Q9NT22 766 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 FOXD4L1Q9NU39 408 aa22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 RBM28Q9NW13 759 aaKnown RBP22.03■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CCDC196A0A1B0GTZ2 297 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PLEKHA8P1O95397 391 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SLC1A4P43007 532 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 USP14P54578 494 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PPIL2Q13356 520 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CCDC96Q2M329 555 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 KCTD1Q719H9 257 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 SPRYD3Q8NCJ5 442 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 DCAF4Q8WV16 495 aa22.02■■□□□ 1.12
TNFRSF1A-213ENST00000540022 C19orf81C9J6K1 198 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CPLX1O14810 134 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 DHX16O60231 1041 aaKnown RBP22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 PPFIA3O75145 1194 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 HMGCS2P54868 508 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 ASPRV1Q53RT3 343 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TMTC3Q6ZXV5 915 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 GPCPD1Q9NPB8 672 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 BMP3P12645 472 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SH3D19Q5HYK7 790 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TTBK2Q6IQ55 1244 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 NBPF11Q86T75 865 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SRBD1Q8N5C6 995 aaKnown RBP22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 NSUN7Q8NE18 718 aaKnown RBP22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 LPAR1Q92633 364 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 INTS4Q96HW7 963 aaKnown RBP22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 KCNH4Q9UQ05 1017 aa22.01■■□□□ 1.11
TNFRSF1A-213ENST00000540022 KLRF2D3W0D1 207 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CXCL11O14625 94 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 JAK2O60674 1132 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 HSP90AA1P07900 732 aaKnown RBP22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 FUT2Q10981 343 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SLC35G1Q2M3R5 365 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 FAM83BQ5T0W9 1011 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 GPATCH4Q5T3I0 446 aaKnown RBP22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 REM2Q8IYK8 340 aaPredicted RBP22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CCDC82Q8N4S0 544 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 C12orf42Q96LP6 360 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CPVLQ9H3G5 476 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 RNF186Q9NXI6 227 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SAGE1Q9NXZ1 904 aa22■■□□□ 1.11
TNFRSF1A-213ENST00000540022 MYH4Q9Y623 1939 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 IFNAR1P17181 557 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 VCAM1P19320 739 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 GNAQP50148 359 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CPLX2Q6PUV4 134 aaKnown RBP21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 PHKBQ93100 1093 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 LLPHQ9BRT6 129 aaKnown RBP21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 UBA5Q9GZZ9 404 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 DAXXQ9UER7 740 aaPredicted RBP21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms