RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 U2AF1L4Q8WU68 220 aaKnown RBP22.56■■□□□ 1.2
CLIP1-211ENST00000539080 SHISA4Q96DD7 197 aa22.56■■□□□ 1.2
CLIP1-211ENST00000539080 ZNF236Q9UL36 1845 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 STRNO43815 780 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 RAD21O60216 631 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 SGPL1O95470 568 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 FGAP02671 866 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 TFAP4Q01664 338 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 FAM83BQ5T0W9 1011 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 WDR78Q5VTH9 848 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 ZNF589Q86UQ0 364 aaPredicted RBP22.55■■□□□ 1.2
CLIP1-211ENST00000539080 TRIB2Q92519 343 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 ATG4CQ96DT6 458 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 MOV10L1Q9BXT6 1211 aaKnown RBP22.55■■□□□ 1.2
CLIP1-211ENST00000539080 PPP1R9AQ9ULJ8 1098 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 RPTORQ8N122 1335 aa22.55■■□□□ 1.2
CLIP1-211ENST00000539080 FGRP09769 529 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 ZKSCAN1P17029 563 aaPredicted RBP22.54■■□□□ 1.2
CLIP1-211ENST00000539080 CTDSPL2Q05D32 466 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 GRB14Q14449 540 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 GMCL1P1Q8NEA9 526 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 MROH8Q9H579 483 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 DIAPH3Q9NSV4 1193 aa22.54■■□□□ 1.2
CLIP1-211ENST00000539080 ORC4O43929 436 aa22.53■■□□□ 1.2
CLIP1-211ENST00000539080 NDUFB10O96000 172 aa22.53■■□□□ 1.2
CLIP1-211ENST00000539080 HOXC6P09630 235 aa22.53■■□□□ 1.2
CLIP1-211ENST00000539080 FAM47AQ5JRC9 791 aa22.53■■□□□ 1.2
CLIP1-211ENST00000539080 MAP3K21Q5TCX8 1036 aa22.53■■□□□ 1.2
CLIP1-211ENST00000539080 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.53■■□□□ 1.25e-9■■■■□ 19.5
CLIP1-211ENST00000539080 HMX1Q9NP08 348 aaPredicted RBP22.53■■□□□ 1.2
CLIP1-211ENST00000539080 COL11A1P12107 1806 aaPredicted RBP22.52■■□□□ 1.2
CLIP1-211ENST00000539080 TSPY2A6NKD2 308 aa22.52■■□□□ 1.2
CLIP1-211ENST00000539080 SLC25A27O95847 323 aa22.52■■□□□ 1.2
CLIP1-211ENST00000539080 ERCC3P19447 782 aa22.52■■□□□ 1.2
CLIP1-211ENST00000539080 PDE4AP27815 886 aa22.52■■□□□ 1.2
CLIP1-211ENST00000539080 PRPF38BQ5VTL8 546 aaKnown RBP22.52■■□□□ 1.2
CLIP1-211ENST00000539080 FBXO28Q9NVF7 368 aa22.52■■□□□ 1.2
CLIP1-211ENST00000539080 VWA5AO00534 786 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 PCP11498 1178 aaKnown RBP22.51■■□□□ 1.19
CLIP1-211ENST00000539080 PLS1Q14651 629 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 TMEM132BQ14DG7 1078 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 CWC27Q6UX04 472 aaKnown RBP22.51■■□□□ 1.19
CLIP1-211ENST00000539080 ABRAQ8N0Z2 381 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 DEFB118Q96PH6 123 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 SLF1Q9BQI6 1058 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 CRISPLD2Q9H0B8 497 aa22.51■■□□□ 1.19
CLIP1-211ENST00000539080 COPB2P35606 906 aa22.5■■□□□ 1.19
CLIP1-211ENST00000539080 TRIM32Q13049 653 aa22.5■■□□□ 1.19
CLIP1-211ENST00000539080 TTC22Q5TAA0 569 aa22.5■■□□□ 1.19
CLIP1-211ENST00000539080 SAMD1Q6SPF0 538 aaPredicted RBP22.5■■□□□ 1.19
CLIP1-211ENST00000539080 PRPF38AQ8NAV1 312 aaKnown RBP22.5■■□□□ 1.19
CLIP1-211ENST00000539080 RANBP6O60518 1105 aaKnown RBP22.49■■□□□ 1.19
CLIP1-211ENST00000539080 PRKAR2AP13861 404 aaKnown RBP22.49■■□□□ 1.19
CLIP1-211ENST00000539080 NT5C2P49902 561 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 CCL14Q16627 93 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 UBE2Q1Q7Z7E8 422 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 NCAPG2Q86XI2 1143 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 RIOX2Q8IUF8 465 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 LRRC47Q8N1G4 583 aaKnown RBP22.49■■□□□ 1.19
CLIP1-211ENST00000539080 REPS2Q8NFH8 660 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 NUP88Q99567 741 aaPredicted RBP22.49■■□□□ 1.19
CLIP1-211ENST00000539080 SLC5A4Q9NY91 659 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 FEM1BQ9UK73 627 aa22.49■■□□□ 1.19
CLIP1-211ENST00000539080 ZNF214Q9UL59 606 aaPredicted RBP22.49■■□□□ 1.19
CLIP1-211ENST00000539080 TFRCP02786 760 aaKnown RBP22.48■■□□□ 1.19
CLIP1-211ENST00000539080 ADORA2AP29274 412 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 STAT3P40763 770 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 NOVP48745 357 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 CACNB2Q08289 660 aaPredicted RBP22.48■■□□□ 1.19
CLIP1-211ENST00000539080 SLFN13Q68D06 897 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 DPP9Q86TI2 863 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 INCENPQ9NQS7 918 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 IL17RBQ9NRM6 502 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 STX8Q9UNK0 236 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 TACC3Q9Y6A5 838 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 PDE4DIPQ5VU43 2346 aa22.48■■□□□ 1.19
CLIP1-211ENST00000539080 LAMA4Q16363 1823 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 FARP2O94887 1054 aaPredicted RBP22.47■■□□□ 1.19
CLIP1-211ENST00000539080 BMP3P12645 472 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 GSPT1P15170 499 aaKnown RBP22.47■■□□□ 1.19
CLIP1-211ENST00000539080 MFSD14CQ5VZR4 134 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 ANKLE1Q8NAG6 615 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 STAG1Q8WVM7 1258 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 GMCL1Q96IK5 515 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 DSCC1Q9BVC3 393 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 RNF41Q9H4P4 317 aaPredicted RBP22.47■■□□□ 1.19
CLIP1-211ENST00000539080 TCP11L1Q9NUJ3 509 aa22.47■■□□□ 1.19
CLIP1-211ENST00000539080 ATP2A1O14983 1001 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 FDX1P10109 184 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 FCER1AP12319 257 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 AKNAD1Q5T1N1 836 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 OLFML2BQ68BL8 750 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 MFSD6Q6ZSS7 791 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 NPLOC4Q8TAT6 608 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 TEX13BQ9BXU2 312 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 TOMM22Q9NS69 142 aa22.46■■□□□ 1.19
CLIP1-211ENST00000539080 MKI67P46013 3256 aaKnown RBP22.45■■□□□ 1.18
CLIP1-211ENST00000539080 ZNF213O14771 459 aa22.45■■□□□ 1.18
CLIP1-211ENST00000539080 ZBED4O75132 1171 aa22.45■■□□□ 1.18
CLIP1-211ENST00000539080 IGHA2P01877 340 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms