RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 RNF113AO15541 343 aaKnown RBP10.14□□□□□ -0.79
USP28-203ENST00000537490 RAD21O60216 631 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 RASA1P20936 1047 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 ATN1P54259 1190 aaPredicted RBP10.14□□□□□ -0.79
USP28-203ENST00000537490 MDM2Q00987 491 aaPredicted RBP10.14□□□□□ -0.79
USP28-203ENST00000537490 FAM83BQ5T0W9 1011 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 GJC2Q5T442 439 aaPredicted RBP10.14□□□□□ -0.79
USP28-203ENST00000537490 ABRAQ8N0Z2 381 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 APPBP2Q92624 585 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 MAML3Q96JK9 1138 aa10.14□□□□□ -0.79
USP28-203ENST00000537490 UBE2OQ9C0C9 1292 aaKnown RBP10.14□□□□□ -0.79
USP28-203ENST00000537490 RLFQ13129 1914 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 M0R2C6 588 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 VWA5AO00534 786 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 SEPT4O43236 478 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 GPAA1O43292 621 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 SLC25A27O95847 323 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 PGK2P07205 417 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 FCER1AP12319 257 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 STAT3P40763 770 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 LRIT3Q3SXY7 679 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 GIMAP6Q6P9H5 292 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 RIOX2Q8IUF8 465 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 TDHQ8IZJ6 230 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 REPS2Q8NFH8 660 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 MMP19Q99542 508 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 NUP88Q99567 741 aaPredicted RBP10.13□□□□□ -0.79
USP28-203ENST00000537490 MKNK2Q9HBH9 465 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 EPB41L4AQ9HCS5 686 aaPredicted RBP10.13□□□□□ -0.79
USP28-203ENST00000537490 GOPCQ9HD26 462 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 SLC5A4Q9NY91 659 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 PPP1R9AQ9ULJ8 1098 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 PCDHB15Q9Y5E8 787 aa10.13□□□□□ -0.79
USP28-203ENST00000537490 BAZ2AQ9UIF9 1905 aaKnown RBP10.13□□□□□ -0.79
USP28-203ENST00000537490 F5H6K3 240 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 RTP1P59025 263 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 KLRC3Q07444 240 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 ZNF792Q3KQV3 632 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 SLC39A5Q6ZMH5 540 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 ARRDC4Q8NCT1 418 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 OTUD7AQ8TE49 926 aaPredicted RBP10.12□□□□□ -0.79
USP28-203ENST00000537490 GPATCH3Q96I76 525 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 SEC62Q99442 399 aaKnown RBP10.12□□□□□ -0.79
USP28-203ENST00000537490 FOXD4L1Q9NU39 408 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 NYAP2Q9P242 653 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 CLIP2Q9UDT6 1046 aa10.12□□□□□ -0.79
USP28-203ENST00000537490 ZNF214Q9UL59 606 aaPredicted RBP10.12□□□□□ -0.79
USP28-203ENST00000537490 A0A0G2JMZ2 1700 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 IGKV6D-41A0A0C4DH26 115 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 PATL2C9JE40 543 aaKnown RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 PRDM1O75626 825 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 NDUFB10O96000 172 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 MYCNP04198 464 aaPredicted RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 APPP05067 770 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 ZFYP08048 801 aaPredicted RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 TAL1P17542 331 aaPredicted RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 TDO2P48775 406 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 LRRC41Q15345 812 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 FAM47AQ5JRC9 791 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 Q7L0L9 218 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 IFNL3Q8IZI9 196 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 ZNF444Q8N0Y2 327 aaPredicted RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 PI4K2BQ8TCG2 481 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 SLF1Q9BQI6 1058 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 DIS3Q9Y2L1 958 aaKnown RBP10.11□□□□□ -0.79
USP28-203ENST00000537490 RIPK3Q9Y572 518 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 ROBO3Q96MS0 1386 aa10.11□□□□□ -0.79
USP28-203ENST00000537490 KBTBD13C9JR72 458 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 ZNF865P0CJ78 1059 aaPredicted RBP10.1□□□□□ -0.79
USP28-203ENST00000537490 GNAT2P19087 354 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 ADCYAP1R1P41586 468 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 KCTD2Q14681 263 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 GPR153Q6NV75 609 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 MKL1Q969V6 931 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 FERMT2Q96AC1 680 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 CEP95Q96GE4 821 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 LBHD1Q9BQE6 289 aaPredicted RBP10.1□□□□□ -0.79
USP28-203ENST00000537490 TINF2Q9BSI4 451 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 MTMR4Q9NYA4 1195 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 NRBP1Q9UHY1 535 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 ATP11BQ9Y2G3 1177 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 RANBP2P49792 3224 aaKnown RBP10.1□□□□□ -0.79
USP28-203ENST00000537490 ZNF236Q9UL36 1845 aa10.1□□□□□ -0.79
USP28-203ENST00000537490 TTC41PQ6P2S7 1318 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 ERC2O15083 957 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 PGK1P00558 417 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 COPB2P35606 906 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 SLC4A3P48751 1232 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 SNX17Q15036 470 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 TRIM60Q495X7 471 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 ZMYM1Q5SVZ6 1142 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 SNRNP48Q6IEG0 339 aaKnown RBP10.09□□□□□ -0.79
USP28-203ENST00000537490 CPXCR1Q8N123 301 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 DEFB123Q8N688 67 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 PRPF38AQ8NAV1 312 aaKnown RBP10.09□□□□□ -0.79
USP28-203ENST00000537490 TEX13BQ9BXU2 312 aa10.09□□□□□ -0.79
USP28-203ENST00000537490 RAVER2Q9HCJ3 691 aaKnown RBP10.09□□□□□ -0.79
USP28-203ENST00000537490 DNAJC25-GNG10A0A024R161 153 aa10.08□□□□□ -0.8
USP28-203ENST00000537490 ATP2A1O14983 1001 aa10.08□□□□□ -0.8
USP28-203ENST00000537490 ZBED4O75132 1171 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms