RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 BRMS1Q9HCU9 246 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 LIMA1Q9UHB6 759 aaKnown RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 DUOX1Q9NRD9 1551 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 USP17L12C9JPN9 530 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 USP17L21D6R901 530 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ERVK-24P63145 666 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 IRX5P78411 483 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-234ENST00000536990 KRT31Q15323 416 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 SLC35F6Q8N357 371 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ACRBPQ8NEB7 543 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 CELF1Q92879 486 aaKnown RBP13.06□□□□□ -0.32
SYNE1-234ENST00000536990 PNKPQ96T60 521 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 TTF2Q9UNY4 1162 aaKnown RBP13.06□□□□□ -0.32
SYNE1-234ENST00000536990 CTNND2Q9UQB3 1225 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 RNF225M0QZC1 329 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ZBTB22O15209 634 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ABL1P00519 1130 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 FGRP09769 529 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ATP2C1P98194 919 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-234ENST00000536990 TROAPQ12815 778 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 ZNF384Q8TF68 577 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 A0A1B0GUL6 1792 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 DLEC1Q9Y238 1755 aa13.06□□□□□ -0.32
SYNE1-234ENST00000536990 CTAGE9A4FU28 777 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 POTEB2H3BUK9 544 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 ARHGAP25P42331 645 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 MUM1L1Q5H9M0 696 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 TTC38Q5R3I4 469 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 FBXO33Q7Z6M2 555 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 TMTC1Q8IUR5 882 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 STAMQ92783 540 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 MTRQ99707 1265 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 SPATA31A5Q5VU36 1347 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 SPATA31A7Q8IWB4 1347 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 COBLO75128 1261 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 DDAH1O94760 285 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 TFRCP02786 760 aaKnown RBP13.05□□□□□ -0.32
SYNE1-234ENST00000536990 CCT6AP40227 531 aaKnown RBP13.05□□□□□ -0.32
SYNE1-234ENST00000536990 PTGDRQ13258 359 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 KIF4BQ2VIQ3 1234 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 PDXDC2PQ6P474 469 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 LINC00116Q8NCU8 138 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 NSUN4Q96CB9 384 aaKnown RBP13.05□□□□□ -0.32
SYNE1-234ENST00000536990 MYH13Q9UKX3 1938 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 GYS2P54840 703 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 MSL3Q8N5Y2 521 aaKnown RBP13.05□□□□□ -0.32
SYNE1-234ENST00000536990 EXOC4Q96A65 974 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 DNAJC5Q9H3Z4 198 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 ABHD10Q9NUJ1 306 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 PSD3Q9NYI0 1048 aa13.05□□□□□ -0.32
SYNE1-234ENST00000536990 CDC25AP30304 524 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 MECOMQ03112 1051 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 GPS2Q13227 327 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 TMTC3Q6ZXV5 915 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 NRAPQ86VF7 1730 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 CTCFLQ8NI51 663 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 CRNKL1Q9BZJ0 848 aaKnown RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 BLZF1Q9H2G9 400 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 TMEM51Q9NW97 253 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 BAZ2BQ9UIF8 2168 aaKnown RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 RWDD2AQ9UIY3 292 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 ADAM21Q9UKJ8 722 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 L1RE1Q9UN81 338 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 N4BP3O15049 544 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 COPB1P53618 953 aaKnown RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 RPS8P62241 208 aaKnown RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 TUBB4BP68371 445 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 IL17AQ16552 155 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 SLC10A5Q5PT55 438 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 BARGINQ6ZT62 677 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 IQUBQ8NA54 791 aa13.04□□□□□ -0.32
SYNE1-234ENST00000536990 NAPGQ99747 312 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-234ENST00000536990 NUTM2BA6NNL0 878 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 NUTM2EB1AL46 878 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 GTPBP6O43824 516 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 ORC4O43929 436 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 CAPN2P17655 700 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 RRAGBQ5VZM2 374 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 TBC1D9BQ66K14 1250 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 COL5A3P25940 1745 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 CNTNAP5Q8WYK1 1306 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 KLRK1P26718 216 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 HIBADHP31937 336 aaKnown RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 KCNQ4P56696 695 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 AMPD2Q01433 879 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 WHAMMP3Q1A5X7 153 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 CYP26C1Q6V0L0 522 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 HDXQ7Z353 690 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 NLRP3Q96P20 1036 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 VPS16Q9H269 839 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 ABCB6Q9NP58 842 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 DCP1AQ9NPI6 582 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-234ENST00000536990 MYO1AQ9UBC5 1043 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 SCN7AQ01118 1682 aa13.03□□□□□ -0.32
SYNE1-234ENST00000536990 CASZ1Q86V15 1759 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 PAK1Q13153 545 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 TCP11X2Q5H9J9 407 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 FAM47AQ5JRC9 791 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 SRBD1Q8N5C6 995 aaKnown RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms