RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 RNF111Q6ZNA4 994 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 FRMD5Q7Z6J6 570 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 SLFN12Q8IYM2 578 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 USHBP1Q8N6Y0 703 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 LINC01356Q8N9X3 169 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 MZB1Q8WU39 189 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 JARID2Q92833 1246 aaPredicted RBP4.98□□□□□ -1.61
SKA3-207ENST00000536239 ASPNQ9BXN1 380 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 ZMYM5Q9UJ78 669 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 ABLIM1O14639 778 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 CILPO75339 1184 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 SDHBP21912 280 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 EIF4BP23588 611 aaKnown RBP4.97□□□□□ -1.61
SKA3-207ENST00000536239 OLFML2BQ68BL8 750 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 CEP128Q6ZU80 1094 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 WAPLQ7Z5K2 1190 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 ENOX1Q8TC92 643 aaKnown RBP4.97□□□□□ -1.61
SKA3-207ENST00000536239 MAP6Q96JE9 813 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 ASB16Q96NS5 453 aa4.97□□□□□ -1.61
SKA3-207ENST00000536239 INSRRP14616 1297 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 ERVFRD-1P60508 538 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 LDHDQ86WU2 507 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 IGDCC3Q8IVU1 814 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 TP53I13Q8NBR0 393 aaPredicted RBP4.96□□□□□ -1.62
SKA3-207ENST00000536239 RETREG2Q8NC44 543 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 SYTL5Q8TDW5 730 aaPredicted RBP4.96□□□□□ -1.62
SKA3-207ENST00000536239 VWCEQ96DN2 955 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 CCDC74BQ96LY2 380 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 PWWP2AQ96N64 755 aa4.96□□□□□ -1.62
SKA3-207ENST00000536239 HHIPL1Q96JK4 782 aa4.95□□□□□ -1.62
SKA3-207ENST00000536239 BDH2Q9BUT1 245 aa4.95□□□□□ -1.62
SKA3-207ENST00000536239 HDAC8Q9BY41 377 aa4.95□□□□□ -1.62
SKA3-207ENST00000536239 FOXP3Q9BZS1 431 aa4.95□□□□□ -1.62
SKA3-207ENST00000536239 ASCC2Q9H1I8 757 aaPredicted RBP4.95□□□□□ -1.62
SKA3-207ENST00000536239 KLHL14Q9P2G3 628 aa4.95□□□□□ -1.62
SKA3-207ENST00000536239 TMEM82A0PJX8 343 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 CHURC1-FNTBB4DL54 471 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 MPOP05164 745 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 LDHBP07195 334 aaKnown RBP4.94□□□□□ -1.62
SKA3-207ENST00000536239 GNA15P30679 374 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 NMIQ13287 307 aaPredicted RBP4.94□□□□□ -1.62
SKA3-207ENST00000536239 PUM1Q14671 1186 aaKnown RBP eCLIP4.94□□□□□ -1.62
SKA3-207ENST00000536239 RTP5Q14D33 572 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 DIEXFQ68CQ4 756 aaKnown RBP4.94□□□□□ -1.62
SKA3-207ENST00000536239 DAGLBQ8NCG7 672 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 PLCD4Q9BRC7 762 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 TCFL5Q9UL49 500 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 TLR6Q9Y2C9 796 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 MYRFQ9Y2G1 1151 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 AK5Q9Y6K8 562 aa4.94□□□□□ -1.62
SKA3-207ENST00000536239 SSU72P8A0A1W2PR75 194 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 PRICKLE3O43900 615 aaPredicted RBP4.93□□□□□ -1.62
SKA3-207ENST00000536239 P4HBP07237 508 aaKnown RBP4.93□□□□□ -1.62
SKA3-207ENST00000536239 RLBP1P12271 317 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 PCBP3P57721 371 aaKnown RBP4.93□□□□□ -1.62
SKA3-207ENST00000536239 RTP1P59025 263 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 HHIPL2Q6UWX4 724 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 TMC6Q7Z403 805 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 CCDC84Q86UT8 332 aaPredicted RBP4.93□□□□□ -1.62
SKA3-207ENST00000536239 TCTN2Q96GX1 697 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 REV1Q9UBZ9 1251 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 PCDHA5Q9Y5H7 936 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 PRR36Q9H6K5 1346 aa4.93□□□□□ -1.62
SKA3-207ENST00000536239 BUB1BO60566 1050 aaPredicted RBP4.92□□□□□ -1.62
SKA3-207ENST00000536239 BPNT1O95861 308 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 ARL4AP40617 200 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 KCNC1P48547 511 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 CAP1Q01518 475 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 TMEM62Q0P6H9 643 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 KIR3DS1Q14943 382 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 ZFYVE27Q5T4F4 411 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 GALNT18Q6P9A2 607 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 ZNF655Q8N720 491 aaPredicted RBP4.92□□□□□ -1.62
SKA3-207ENST00000536239 LINC00116Q8NCU8 138 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 GPR20Q99678 358 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 KLHL3Q9UH77 587 aa4.92□□□□□ -1.62
SKA3-207ENST00000536239 FAM221AA4D161 298 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 FADS2P1A8MWK0 482 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 FFAR3O14843 346 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 GBP1P32455 592 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 SLURP1P55000 103 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 LAPTM5Q13571 262 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 RAB3GAP1Q15042 981 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 BBS9Q3SYG4 887 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 HSF5Q4G112 596 aaPredicted RBP4.91□□□□□ -1.62
SKA3-207ENST00000536239 ZPBP2Q6X784 338 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 BNC2Q6ZN30 1099 aaPredicted RBP4.91□□□□□ -1.62
SKA3-207ENST00000536239 PHACTR4Q8IZ21 702 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 PHC3Q8NDX5 983 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 KIF2CQ99661 725 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 TNFRSF10DQ9UBN6 386 aa4.91□□□□□ -1.62
SKA3-207ENST00000536239 CNOT11Q9UKZ1 510 aaKnown RBP4.91□□□□□ -1.62
SKA3-207ENST00000536239 WTIPA6NIX2 430 aaPredicted RBP4.9□□□□□ -1.63
SKA3-207ENST00000536239 FKTNO75072 461 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 SYPP08247 313 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 NCKAP1LP55160 1127 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 CHMP4BP1P59074 171 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 MEI1Q5TIA1 1274 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 TMC3Q7Z5M5 1100 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 GATAD2BQ8WXI9 593 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms