RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 TTLL1O95922 423 aa12.36□□□□□ -0.43
CSDE1-217ENST00000534699 PRPF38AQ8NAV1 312 aaKnown RBP12.36□□□□□ -0.43
CSDE1-217ENST00000534699 MOV10L1Q9BXT6 1211 aaKnown RBP12.36□□□□□ -0.43
CSDE1-217ENST00000534699 NBPF3Q9H094 633 aa12.36□□□□□ -0.43
CSDE1-217ENST00000534699 ATP2B2Q01814 1243 aa12.36□□□□□ -0.43
CSDE1-217ENST00000534699 GMCL1Q96IK5 515 aa12.36□□□□□ -0.43
CSDE1-217ENST00000534699 PORCNQ9H237 461 aa12.36□□□□□ -0.43
CSDE1-217ENST00000534699 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.36□□□□□ -0.43
CSDE1-217ENST00000534699 M0R2C6 588 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 FLOT1O75955 427 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 CYP2B6P20813 491 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 PPARAQ07869 468 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 SHROOM1Q2M3G4 852 aaPredicted RBP12.35□□□□□ -0.43
CSDE1-217ENST00000534699 MCMDC2Q4G0Z9 681 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 CHURC1Q8WUH1 139 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 DEFB118Q96PH6 123 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 SLF1Q9BQI6 1058 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.35□□□□□ -0.43
CSDE1-217ENST00000534699 MTMR4Q9NYA4 1195 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 ZBED4O75132 1171 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 FCER1AP12319 257 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
CSDE1-217ENST00000534699 BMP8BP34820 402 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 NUCB1Q02818 461 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 POTEEQ6S8J3 1075 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 SLC44A5Q8NCS7 719 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 CHST13Q8NET6 341 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 C11orf49Q9H6J7 331 aa12.35□□□□□ -0.43
CSDE1-217ENST00000534699 EPB41L4AQ9HCS5 686 aaPredicted RBP12.35□□□□□ -0.43
CSDE1-217ENST00000534699 CACNB2Q08289 660 aaPredicted RBP12.34□□□□□ -0.43
CSDE1-217ENST00000534699 ZYXQ15942 572 aaKnown RBP12.34□□□□□ -0.43
CSDE1-217ENST00000534699 ARRDC4Q8NCT1 418 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 REPS2Q8NFH8 660 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 VWA5AO00534 786 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 APPP05067 770 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 CHD1LQ86WJ1 897 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 TTC14Q96N46 770 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 RNF41Q9H4P4 317 aaPredicted RBP12.34□□□□□ -0.43
CSDE1-217ENST00000534699 MINDY4BA8MYZ0 360 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 F5H6K3 240 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 COL6A1P12109 1028 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 STAT3P40763 770 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 KLRC3Q07444 240 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 DPP9Q86TI2 863 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 TEX13BQ9BXU2 312 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 SEZ6LQ9BYH1 1024 aa12.34□□□□□ -0.43
CSDE1-217ENST00000534699 DDX20Q9UHI6 824 aaKnown RBP12.34□□□□□ -0.43
CSDE1-217ENST00000534699 ALPK3Q96L96 1907 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 TSPY3P0CV98 308 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 TSPY8P0CW00 308 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 DCAF4Q8WV16 495 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 SYNGAP1Q96PV0 1343 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 CYBAP13498 195 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 ERCC3P19447 782 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 HABP4Q5JVS0 413 aaKnown RBP12.33□□□□□ -0.44
CSDE1-217ENST00000534699 STAG1Q8WVM7 1258 aa12.33□□□□□ -0.44
CSDE1-217ENST00000534699 DNM1LO00429 736 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 ADORA2AP29274 412 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 KCTD2Q14681 263 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 C1orf53Q5VUE5 145 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 LHX8Q68G74 356 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 DPF3Q92784 378 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 ATG4CQ96DT6 458 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 MMP19Q99542 508 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 CTDP1Q9Y5B0 961 aaPredicted RBP12.32□□□□□ -0.44
CSDE1-217ENST00000534699 RAD50Q92878 1312 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 KIAA0100Q14667 2235 aaKnown RBP12.32□□□□□ -0.44
CSDE1-217ENST00000534699 CYP2D7A0A087X1C5 515 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 SEPT4O43236 478 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 EVI5O60447 810 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 NDUFB10O96000 172 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 GPR153Q6NV75 609 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 MAMDC4Q6UXC1 1216 aa12.32□□□□□ -0.44
CSDE1-217ENST00000534699 ZNF214Q9UL59 606 aaPredicted RBP12.32□□□□□ -0.44
CSDE1-217ENST00000534699 CCDC171Q6TFL3 1326 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 BMP3P12645 472 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 TMEM132BQ14DG7 1078 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 ZNF792Q3KQV3 632 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 KIAA1755Q5JYT7 1200 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 TSEN34Q9BSV6 310 aaKnown RBP12.31□□□□□ -0.44
CSDE1-217ENST00000534699 PRO3102Q9H379 93 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 SLC38A10Q9HBR0 1119 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 CTNNA3Q9UI47 895 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 PDE4DIPQ5VU43 2346 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 NKX3-2P78367 333 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 BTNL9Q6UXG8 535 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 NPLOC4Q8TAT6 608 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 CLIP2Q9UDT6 1046 aa12.31□□□□□ -0.44
CSDE1-217ENST00000534699 MNX1P50219 401 aaPredicted RBP12.3□□□□□ -0.44
CSDE1-217ENST00000534699 TFAP4Q01664 338 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 SLFNL1Q499Z3 407 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 FAM83BQ5T0W9 1011 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 SLFN13Q68D06 897 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 NCAPG2Q86XI2 1143 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 CEP95Q96GE4 821 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 MAML3Q96JK9 1138 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 DSCC1Q9BVC3 393 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 DNAJC25-GNG10A0A024R161 153 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 PLEKHM2Q8IWE5 1019 aa12.3□□□□□ -0.44
CSDE1-217ENST00000534699 ANKS1AQ92625 1134 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms