RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 CLIP2Q9UDT6 1046 aa6.04□□□□□ -1.44
USH1C-210ENST00000534556 PNMA3Q9UL41 463 aa6.04□□□□□ -1.44
USH1C-210ENST00000534556 RABGAP1Q9Y3P9 1069 aa6.04□□□□□ -1.44
USH1C-210ENST00000534556 RIPK3Q9Y572 518 aa6.04□□□□□ -1.44
USH1C-210ENST00000534556 LAMA3Q16787 3333 aa6.04□□□□□ -1.44
USH1C-210ENST00000534556 ZMYM6O95789 1325 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 WDR46O15213 610 aaKnown RBP6.03□□□□□ -1.44
USH1C-210ENST00000534556 ORC4O43929 436 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 COBLO75128 1261 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 GNRH1P01148 92 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 INHAP05111 366 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 CYP2B6P20813 491 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 PTPREP23469 700 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 CHMLP26374 656 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 USP14P54578 494 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 PRMT2P55345 433 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 SNAP25P60880 206 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 MLLT1Q03111 559 aaPredicted RBP6.03□□□□□ -1.44
USH1C-210ENST00000534556 PABPC4Q13310 644 aaKnown RBP eCLIP6.03□□□□□ -1.44
USH1C-210ENST00000534556 COG2Q14746 738 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 MAP3K21Q5TCX8 1036 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 SAMD1Q6SPF0 538 aaPredicted RBP6.03□□□□□ -1.44
USH1C-210ENST00000534556 RAET1EQ8TD07 263 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 TANGO6Q9C0B7 1094 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 MKNK2Q9HBH9 465 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 ARHGEF10LQ9HCE6 1279 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 TAOK2Q9UL54 1235 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 ZNF214Q9UL59 606 aaPredicted RBP6.03□□□□□ -1.44
USH1C-210ENST00000534556 TRIOBPQ9H2D6 2365 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 WDR81Q562E7 1941 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 CHD9Q3L8U1 2897 aa6.03□□□□□ -1.44
USH1C-210ENST00000534556 CUL9Q8IWT3 2517 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 TRIP12Q14669 1992 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 LTBP2Q14767 1821 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 VWA5AO00534 786 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 FLOT1O75955 427 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 CCND3P30281 292 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 CACNB2Q08289 660 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 GRB14Q14449 540 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 TTBK2Q6IQ55 1244 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 STOX1Q6ZVD7 989 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 CYB5R4Q7L1T6 521 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 PLEKHH3Q7Z736 793 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 ZNF444Q8N0Y2 327 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 PXYLP1Q8TE99 480 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 DIS3LQ8TF46 1054 aaKnown RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 STAG1Q8WVM7 1258 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 LPAR1Q92633 364 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 COA7Q96BR5 231 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 DDRGK1Q96HY6 314 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 FGD4Q96M96 766 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 ZKSCAN3Q9BRR0 538 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 SPATC1LQ9H0A9 340 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 SENP2Q9HC62 589 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 PAK6Q9NQU5 681 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 ZBTB47Q9UFB7 747 aaPredicted RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 PPP1R9AQ9ULJ8 1098 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 DDX49Q9Y6V7 483 aaKnown RBP6.02□□□□□ -1.45
USH1C-210ENST00000534556 COL6A3P12111 3177 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 EYSQ5T1H1 3165 aa6.02□□□□□ -1.45
USH1C-210ENST00000534556 ASTN1O14525 1302 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 ZNF536O15090 1300 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 B4E1Z4 1266 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 SGSM2O43147 1006 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 RAD21O60216 631 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 RANBP6O60518 1105 aaKnown RBP6.01□□□□□ -1.45
USH1C-210ENST00000534556 TTLL1O95922 423 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 GJB1P08034 283 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 HOXC6P09630 235 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 TSPY3P0CV98 308 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 TSPY8P0CW00 308 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 ERCC3P19447 782 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 MCCP23508 829 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 HOXD10P28358 340 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 MAPK4P31152 587 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 CYP2C19P33261 490 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 GJA8P48165 433 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 PDE4BQ07343 736 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 MAP2K5Q13163 448 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 ARHGEF6Q15052 776 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 SLC35G1Q2M3R5 365 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 LRRFIP1Q32MZ4 808 aaKnown RBP6.01□□□□□ -1.45
USH1C-210ENST00000534556 RRP12Q5JTH9 1297 aaKnown RBP6.01□□□□□ -1.45
USH1C-210ENST00000534556 PRAMEF19Q5SWL8 479 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 AKNAD1Q5T1N1 836 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 SLFN13Q68D06 897 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 LHX8Q68G74 356 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 KCTD1Q719H9 257 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 NBPF11Q86T75 865 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 TICAM2Q86XR7 235 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 AMOTL1Q8IY63 956 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 SLAIN1Q8ND83 568 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 U2AF1L4Q8WU68 220 aaKnown RBP6.01□□□□□ -1.45
USH1C-210ENST00000534556 DEFB118Q96PH6 123 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 TMEM47Q9BQJ4 181 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 DSCC1Q9BVC3 393 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 NACAP1Q9BZK3 213 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 CRISPLD2Q9H0B8 497 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 RNF208Q9H0X6 261 aa6.01□□□□□ -1.45
USH1C-210ENST00000534556 CPVLQ9H3G5 476 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms