RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	FBLIM1	Q8WUP2	373 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	BSND	Q8WZ55	320 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CLP1	Q92989	425 aa	Known RBP	4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ZNF622	Q969S3	477 aa	Known RBP eCLIP	4.19	□□□□□ -1.74	3e-8	■■■■□ 19.8
CHMP4A-208	ENST00000534106	ASIC4	Q96FT7	647 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	FBXL18	Q96ME1	805 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	GPR101	Q96P66	508 aa	Predicted RBP	4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	HHIP	Q96QV1	700 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SIN3A	Q96ST3	1273 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CCDC39	Q9UFE4	941 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SEPT3	Q9UH03	358 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ABT1	Q9ULW3	272 aa	Known RBP	4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SOX13	Q9UN79	622 aa		4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.19	□□□□□ -1.74
CHMP4A-208	ENST00000534106	LY75	O60449	1722 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	C4B	P0C0L5	1744 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	RASSF10	A6NK89	507 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	TRAF5	O00463	557 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	FYB1	O15117	783 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	PHACTR2	O75167	634 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	PDGFA	P04085	211 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SERPINB2	P05120	415 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DRD2	P14416	443 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	PHKG2	P15735	406 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DUSP27	Q5VZP5	1158 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CST9	Q5W186	159 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CDPF1	Q6NVV7	123 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DLK2	Q6UY11	383 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	VSIG10L	Q86VR7	867 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	LDHD	Q86WU2	507 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SMG8	Q8ND04	991 aa	Known RBP	4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	FLCN	Q8NFG4	579 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	NXPE3	Q969Y0	559 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CAPNS2	Q96L46	248 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	TMPRSS13	Q9BYE2	586 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	KDM6A	O15550	1401 aa	Predicted RBP	4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CGNL1	Q0VF96	1302 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	USP42	Q9H9J4	1324 aa	Known RBP	4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106	TOGARAM1	Q9Y4F4	1720 aa		4.18	□□□□□ -1.74
CHMP4A-208	ENST00000534106		A0A1W2PP64	1363 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106		H0YIN7	160 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	EREG	O14944	169 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	EDN3	P14138	238 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	HMGB2	P26583	209 aa	Known RBP	4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	MZF1	P28698	734 aa	Predicted RBP	4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CPSF6	Q16630	551 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ALKBH2	Q6NS38	261 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DNAJC10	Q8IXB1	793 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ZKSCAN3	Q9BRR0	538 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	LRRC4C	Q9HCJ2	640 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	RAD18	Q9NS91	495 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	BSDC1	Q9NW68	430 aa	Predicted RBP	4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	TERF2IP	Q9NYB0	399 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	POLI	Q9UNA4	740 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SPG7	Q9UQ90	795 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	DOT1L	Q8TEK3	1739 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	KIAA1551	Q9HCM1	1747 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	PDE4DIP	Q5VU43	2346 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CNTNAP4	Q9C0A0	1308 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ZNF541	Q9H0D2	1346 aa		4.17	□□□□□ -1.74
CHMP4A-208	ENST00000534106	USP54	Q70EL1	1684 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	CARMIL3	Q8ND23	1372 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	LOC100289279	A0A1B0GTE1	492 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	RAB6A	P20340	208 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	MPST	P25325	297 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	EPHX2	P34913	555 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	MSMP	Q1L6U9	139 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	OGFOD2	Q6N063	350 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	VN1R5	Q7Z5H4	357 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	IFNL2	Q8IZJ0	200 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SHISA5	Q8N114	240 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	AGBL5	Q8NDL9	886 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	HELQ	Q8TDG4	1101 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	SUGCT	Q9HAC7	445 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	ZNF277	Q9NRM2	450 aa	Predicted RBP	4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	HACL1	Q9UJ83	578 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	RNF123	Q5XPI4	1314 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	C5	P01031	1676 aa		4.16	□□□□□ -1.74
CHMP4A-208	ENST00000534106	KDR	P35968	1356 aa		4.15	□□□□□ -1.74
CHMP4A-208	ENST00000534106	EDC4	Q6P2E9	1401 aa	Known RBP	4.15	□□□□□ -1.74
CHMP4A-208	ENST00000534106	FAM170B	A6NMN3	283 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	ERVV-2	B6SEH9	535 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	EIF4EBP3	O60516	100 aa	Predicted RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	TIAF1	O95411	115 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	ESRRA	P11474	423 aa	Predicted RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	CANX	P27824	592 aa	Known RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	ADM	P35318	185 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	EPS15	P42566	896 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	EIF1AX	P47813	144 aa	Known RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	SOX4	Q06945	474 aa	Predicted RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	SLC39A6	Q13433	755 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	MAP7	Q14244	749 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	TBC1D9B	Q66K14	1250 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	CIAPIN1	Q6FI81	312 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	DYM	Q7RTS9	669 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	ZAR1	Q86SH2	424 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	PBXIP1	Q96AQ6	731 aa		4.15	□□□□□ -1.75
CHMP4A-208	ENST00000534106	CCDC97	Q96F63	343 aa	Predicted RBP	4.15	□□□□□ -1.75

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