RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FLT3LGP49771 235 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 MB21D1Q8N884 522 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 REPS2Q8NFH8 660 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 ANKS1AQ92625 1134 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 ESR2Q92731 530 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 USP6NLQ92738 828 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 TTC14Q96N46 770 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 PAGR1Q9BTK6 254 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 STX8Q9UNK0 236 aa15.33■□□□□ 0.04
VPS28-216ENST00000533806 CCDC85CA6NKD9 419 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 VWA5AO00534 786 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 KDM4AO75164 1064 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 SLFN13Q68D06 897 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 COA7Q96BR5 231 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 ZNF333Q96JL9 665 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 TMEM47Q9BQJ4 181 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 MOV10L1Q9BXT6 1211 aaKnown RBP15.32■□□□□ 0.04
VPS28-216ENST00000533806 TOMM22Q9NS69 142 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 ZSWIM5Q9P217 1185 aa15.32■□□□□ 0.04
VPS28-216ENST00000533806 A0A0G2JMZ2 1700 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 BRCA2P51587 3418 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 PLA2G6O60733 806 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 TOP1P11387 765 aaKnown RBP15.31■□□□□ 0.04
VPS28-216ENST00000533806 TMEM132BQ14DG7 1078 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 MORN1Q5T089 497 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 GPR142Q7Z601 462 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 DGKHQ86XP1 1220 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 PRPF38AQ8NAV1 312 aaKnown RBP15.31■□□□□ 0.04
VPS28-216ENST00000533806 PXYLP1Q8TE99 480 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 SLF1Q9BQI6 1058 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 SPATC1LQ9H0A9 340 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 CNNM2Q9H8M5 875 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 FEM1BQ9UK73 627 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 ZNF214Q9UL59 606 aaPredicted RBP15.31■□□□□ 0.04
VPS28-216ENST00000533806 RBM8AQ9Y5S9 174 aaKnown RBP15.31■□□□□ 0.04
VPS28-216ENST00000533806 LAMA4Q16363 1823 aa15.31■□□□□ 0.04
VPS28-216ENST00000533806 B4E1Z4 1266 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 ATP2A1O14983 1001 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 CDC45O75419 566 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 BMP3P12645 472 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 MCCP23508 829 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 GRK4P32298 578 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 CCNA1P78396 465 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 NECTIN1Q15223 517 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 SLC9C1Q4G0N8 1177 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 STOX1Q6ZVD7 989 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 PLEKHH3Q7Z736 793 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 SHCBP1Q8NEM2 672 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 RAET1EQ8TD07 263 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 SH3TC2Q8TF17 1288 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 KRT23Q9C075 422 aa15.3■□□□□ 0.04
VPS28-216ENST00000533806 E7EWF7 191 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 RAD21O60216 631 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 ADCY3O60266 1144 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 CAPN15O75808 1086 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 SNHG28P0DPA3 235 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 XRCC5P13010 732 aaKnown RBP15.29■□□□□ 0.04
VPS28-216ENST00000533806 RGS19P49795 217 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 CYB5R4Q7L1T6 521 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 RASGRP2Q7LDG7 609 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 SLAIN1Q8ND83 568 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 ZSCAN10Q96SZ4 725 aaPredicted RBP15.29■□□□□ 0.04
VPS28-216ENST00000533806 ZKSCAN3Q9BRR0 538 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 SLC38A10Q9HBR0 1119 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 MGAMO43451 1857 aa15.29■□□□□ 0.04
VPS28-216ENST00000533806 TMEM232C9JQI7 657 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 IGHA2P01877 340 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 PTPREP23469 700 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 SLC1A4P43007 532 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 GRB14Q14449 540 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 CCDC178Q5BJE1 867 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 KIAA1211Q6ZU35 1233 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 NBPF11Q86T75 865 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 ENAHQ8N8S7 591 aaPredicted RBP15.28■□□□□ 0.04
VPS28-216ENST00000533806 DCAF4Q8WV16 495 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 SOCS4Q8WXH5 440 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 PARP14Q460N5 1801 aa15.28■□□□□ 0.04
VPS28-216ENST00000533806 PLXNB2O15031 1838 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 SLC15A5A6NIM6 579 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 HOXC6P09630 235 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 PDHBP11177 359 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 ELNP15502 786 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 ERCC3P19447 782 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 STAT3P40763 770 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 STAT2P52630 851 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 SEC23AQ15436 765 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 BTNL9Q6UXG8 535 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 IQCA1Q86XH1 822 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 RIOX2Q8IUF8 465 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 NUDT12Q9BQG2 462 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 MROH8Q9H579 483 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 ANO2Q9NQ90 1003 aa15.27■□□□□ 0.04
VPS28-216ENST00000533806 MYH4Q9Y623 1939 aa15.27■□□□□ 0.03
VPS28-216ENST00000533806 TNKSO95271 1327 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 SLC27A2O14975 620 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 STRNO43815 780 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 SLC25A27O95847 323 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 FDX1P10109 184 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 MAP2K5Q13163 448 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 COL9A3Q14050 684 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms