RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 KIAA1755Q5JYT7 1200 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 SLFN13Q68D06 897 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 OTUD7BQ6GQQ9 843 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 FBXO18Q8NFZ0 1043 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 DCAF4Q8WV16 495 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 C8orf76Q96K31 380 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 PTPRFP10586 1907 aa18.5■□□□□ 0.55
TRIM3-213ENST00000533309 H3BQV1 296 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 SMARCA1P28370 1054 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 GUCY1B3Q02153 619 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 NOL9Q5SY16 702 aaKnown RBP18.49■□□□□ 0.55
TRIM3-213ENST00000533309 GPATCH4Q5T3I0 446 aaKnown RBP18.49■□□□□ 0.55
TRIM3-213ENST00000533309 IFFO2Q5TF58 517 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 CLEC17AQ6ZS10 378 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 SHISA4Q96DD7 197 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 GMCL1Q96IK5 515 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 PRKG1Q13976 671 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 CCDC96Q2M329 555 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 KCTD1Q719H9 257 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 FERMT3Q86UX7 667 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 RGS22Q8NE09 1264 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 WASF1Q92558 559 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 UBA5Q9GZZ9 404 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 GPCPD1Q9NPB8 672 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 NMRK2Q9NPI5 230 aa18.49■□□□□ 0.55
TRIM3-213ENST00000533309 SLC1A4P43007 532 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 AKAP17AQ02040 695 aaKnown RBP18.48■□□□□ 0.55
TRIM3-213ENST00000533309 MAP1SQ66K74 1059 aaPredicted RBP18.48■□□□□ 0.55
TRIM3-213ENST00000533309 KRT40Q6A162 431 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 TTBK2Q6IQ55 1244 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 CHAMP1Q96JM3 812 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 NUP88Q99567 741 aaPredicted RBP18.48■□□□□ 0.55
TRIM3-213ENST00000533309 RIOX1Q9H6W3 641 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 VCPKMTQ9H867 229 aa18.48■□□□□ 0.55
TRIM3-213ENST00000533309 RAD21O60216 631 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 PTPRAP18433 802 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 RESTQ13127 1097 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 PFKFB3Q16875 520 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-213ENST00000533309 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-213ENST00000533309 PIBF1Q8WXW3 757 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 SH2D4AQ9H788 454 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 GOPCQ9HD26 462 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 RBM27Q9P2N5 1060 aaKnown RBP18.47■□□□□ 0.55
TRIM3-213ENST00000533309 CLEC11AQ9Y240 323 aa18.47■□□□□ 0.55
TRIM3-213ENST00000533309 SCG2P13521 617 aa18.46■□□□□ 0.55
TRIM3-213ENST00000533309 SPICE1Q8N0Z3 855 aa18.46■□□□□ 0.55
TRIM3-213ENST00000533309 WDR18Q9BV38 432 aa18.46■□□□□ 0.55
TRIM3-213ENST00000533309 SNCAIPQ9Y6H5 919 aa18.46■□□□□ 0.55
TRIM3-213ENST00000533309 PARP14Q460N5 1801 aa18.46■□□□□ 0.55
TRIM3-213ENST00000533309 PPP1R12BO60237 982 aaPredicted RBP18.45■□□□□ 0.54
TRIM3-213ENST00000533309 BAG4O95429 457 aaKnown RBP18.45■□□□□ 0.54
TRIM3-213ENST00000533309 BMP3P12645 472 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 SLC16A2P36021 539 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 VGLL4Q14135 290 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 ZYXQ15942 572 aaKnown RBP18.45■□□□□ 0.54
TRIM3-213ENST00000533309 KIAA1683Q9H0B3 1180 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 PICK1Q9NRD5 415 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 TRAF5O00463 557 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 MAP3K9P80192 1104 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 LDHDQ86WU2 507 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 ADGRF4Q8IZF3 695 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 ZNF526Q8TF50 670 aaPredicted RBP18.45■□□□□ 0.54
TRIM3-213ENST00000533309 PIGSQ96S52 555 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 FEZ1Q99689 392 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 JMJD4Q9H9V9 463 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 VPS54Q9P1Q0 977 aa18.45■□□□□ 0.54
TRIM3-213ENST00000533309 NF2P35240 595 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 IREB2P48200 963 aaKnown RBP18.44■□□□□ 0.54
TRIM3-213ENST00000533309 KIF23Q02241 960 aaPredicted RBP18.44■□□□□ 0.54
TRIM3-213ENST00000533309 FMR1Q06787 632 aaKnown RBP eCLIP18.44■□□□□ 0.54
TRIM3-213ENST00000533309 NFKBIBQ15653 356 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 MAP3K11Q16584 847 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 MOB2Q70IA6 237 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 MTMR8Q96EF0 704 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 RRP36Q96EU6 259 aaKnown RBP18.44■□□□□ 0.54
TRIM3-213ENST00000533309 VAT1LQ9HCJ6 419 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 KCNJ14Q9UNX9 436 aa18.44■□□□□ 0.54
TRIM3-213ENST00000533309 KIF28PB7ZC32 967 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 MMP1P03956 469 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 MTMR2Q13614 643 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 TRIM29Q14134 588 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 FOXD4L6Q3SYB3 417 aaPredicted RBP18.43■□□□□ 0.54
TRIM3-213ENST00000533309 FAM83BQ5T0W9 1011 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 WWC2Q6AWC2 1192 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 TYW1BQ6NUM6 668 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 FAM173BQ6P4H8 233 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 BTNL9Q6UXG8 535 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 FOXD4L3Q6VB84 417 aaPredicted RBP18.43■□□□□ 0.54
TRIM3-213ENST00000533309 HOMER1Q86YM7 354 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 GPKOWQ92917 476 aaPredicted RBP eCLIP18.43■□□□□ 0.54
TRIM3-213ENST00000533309 GBP4Q96PP9 640 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 PHF20Q9BVI0 1012 aa18.43■□□□□ 0.54
TRIM3-213ENST00000533309 USP17L10C9JJH3 530 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 TMEM232C9JQI7 657 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 SPP2Q13103 211 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 DGKZQ13574 1117 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 NPY5RQ15761 445 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 MCTP1Q6DN14 999 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 ZNF280CQ8ND82 737 aa18.42■□□□□ 0.54
TRIM3-213ENST00000533309 ZSCAN16Q9H4T2 348 aaPredicted RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms