RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 KRBA2Q6ZNG9 492 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 TMEM87BQ96K49 555 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 PSMG3-AS1Q96PY0 264 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 CWC25Q9NXE8 425 aaPredicted RBP6.56□□□□□ -1.36
CD44-236ENST00000533222 OGFRQ9NZT2 677 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 PCOLCE2Q9UKZ9 415 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 KIAA1107Q9UPP5 1409 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6CA6NDK9 693 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6BA6NDN3 693 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 CHURC1-FNTBB4DL54 471 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 IPO8O15397 1037 aaKnown RBP6.55□□□□□ -1.36
CD44-236ENST00000533222 IGHA1P01876 353 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 H2AFB1P0C5Y9 115 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 H2AFB2P0C5Z0 115 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6DP0CG33 693 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 ATF4P18848 351 aaPredicted RBP6.55□□□□□ -1.36
CD44-236ENST00000533222 FSTP19883 344 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 TNNT3P45378 269 aaPredicted RBP6.55□□□□□ -1.36
CD44-236ENST00000533222 SOX9P48436 509 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 IRX1P78414 480 aaPredicted RBP6.55□□□□□ -1.36
CD44-236ENST00000533222 PDE4BQ07343 736 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 MAP7Q14244 749 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 LONRF3Q496Y0 759 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 TBC1D10BQ4KMP7 808 aaPredicted RBP6.55□□□□□ -1.36
CD44-236ENST00000533222 FILIP1LQ4L180 1135 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 OVOS1Q6IE37 1185 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 ZNF280DQ6N043 979 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 PAOXQ6QHF9 649 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 CDC37L1Q7L3B6 337 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 HID1Q8IV36 788 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 FBXL6Q8N531 539 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 EHMT1Q9H9B1 1298 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6AQ9NYA3 693 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 FRMD4BQ9Y2L6 1034 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 TACC3Q9Y6A5 838 aa6.55□□□□□ -1.36
CD44-236ENST00000533222 SMARCA2P51531 1590 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 UQCRHLA0A096LP55 91 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 FAM170BA6NMN3 283 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 CCP110O43303 1012 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 TPM3P06753 285 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 UQCRHP07919 91 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 MSNP26038 577 aaKnown RBP6.54□□□□□ -1.36
CD44-236ENST00000533222 DNAJA1P31689 397 aaKnown RBP6.54□□□□□ -1.36
CD44-236ENST00000533222 ZNF165P49910 485 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 TMED1Q13445 227 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 MUM1L1Q5H9M0 696 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 TMEM201Q5SNT2 666 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 C1QTNF12Q5T7M4 302 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 NOL8Q76FK4 1167 aaKnown RBP6.54□□□□□ -1.36
CD44-236ENST00000533222 MRPL41Q8IXM3 137 aaKnown RBP6.54□□□□□ -1.36
CD44-236ENST00000533222 REXO1Q8N1G1 1221 aaKnown RBP6.54□□□□□ -1.36
CD44-236ENST00000533222 TOP6BLQ8N6T0 577 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 FAM13CQ8NE31 585 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 MYRIPQ8NFW9 859 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 TBC1D32Q96NH3 1257 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 AGAP3Q96P47 875 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 ADAM30Q9UKF2 790 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 ZNRF3Q9ULT6 936 aa6.54□□□□□ -1.36
CD44-236ENST00000533222 UHRF1BP1LA0JNW5 1464 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 IL16Q14005 1332 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 TPD52L2O43399 206 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 DHX16O60231 1041 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 ATE1O95260 518 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 F13BP05160 661 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 HSP90AB1P08238 724 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 FGRP09769 529 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 FAM87AP0C7U9 286 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 CAPN2P17655 700 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 POLR2BP30876 1174 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 NFIAQ12857 509 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 CHAF1AQ13111 956 aaPredicted RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 JAKMIP3Q5VZ66 844 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 FBXW10Q5XX13 1052 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 RNF43Q68DV7 783 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 RUFY4Q6ZNE9 571 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 ZAR1Q86SH2 424 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 MCATQ8IVS2 390 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 SUGP1Q8IWZ8 645 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 RIN3Q8TB24 985 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 FERD3LQ96RJ6 166 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 CEP89Q96ST8 783 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 MIPEPQ99797 713 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 FOXQ1Q9C009 403 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 SEMA6BQ9H3T3 888 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 DEF6Q9H4E7 631 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 CWC15Q9P013 229 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 NOL7Q9UMY1 257 aaKnown RBP6.53□□□□□ -1.36
CD44-236ENST00000533222 U3KQE9 123 aa6.53□□□□□ -1.36
CD44-236ENST00000533222 SMG6Q86US8 1419 aaKnown RBP6.52□□□□□ -1.37
CD44-236ENST00000533222 SLC22A31A6NKX4 558 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 LRIG2O94898 1065 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 SLITRK5O94991 958 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 CST3P01034 146 aaPredicted RBP6.52□□□□□ -1.37
CD44-236ENST00000533222 IGLV1-40P01703 118 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 FAM200BP0CF97 657 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 VDRP11473 427 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 POLD1P28340 1107 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 HSP90AB2PQ58FF8 381 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 ARSHQ5FYA8 562 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 CCDC30Q5VVM6 783 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms