RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 MCTP2Q6DN12 878 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 STYK1Q6J9G0 422 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 C16orf45Q96MC5 204 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 BIN2Q9UBW5 565 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 CALCRLQ16602 461 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 KIF18AQ8NI77 898 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 MAP3K14Q99558 947 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 LRWD1Q9UFC0 647 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 NFE2L3Q9Y4A8 694 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 N4BP2Q86UW6 1770 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 WTIPA6NIX2 430 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 C21orf2O43822 256 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 OR52Z1P0C646 297 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 MTIF2P46199 727 aaKnown RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 DDR1Q08345 913 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 TROAPQ12815 778 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 SV2BQ7L1I2 683 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 FAM177A1Q8N128 213 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 ZNF397Q8NF99 534 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 OXER1Q8TDS5 423 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 CEP95Q96GE4 821 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 PDLIM2Q96JY6 352 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 PLIN2Q99541 437 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 DOT1LQ8TEK3 1739 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 MYO3BQ8WXR4 1341 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 BICDL2A1A5D9 508 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 SEC23AQ15436 765 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 STRIP1Q5VSL9 837 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 HHIPL2Q6UWX4 724 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 C11orf57Q6ZUT1 292 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 MTERF4Q7Z6M4 381 aaKnown RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 SRBD1Q8N5C6 995 aaKnown RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 CSRNP1Q96S65 589 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 ONECUT3O60422 494 aaPredicted RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 PRKCSHP14314 528 aaPredicted RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 TM4SF1P30408 202 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 DPCR1Q3MIW9 517 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 ARL6IP4Q66PJ3 421 aaKnown RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 C16orf86Q6ZW13 317 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 PRIMPOLQ96LW4 560 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 PIGSQ96S52 555 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 PSTPIP2Q9H939 334 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 GOPCQ9HD26 462 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 TRMT1Q9NXH9 659 aaKnown RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 SLFN14P0C7P3 912 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 TNFAIP1Q13829 316 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 HSP90AA2PQ14568 343 aaPredicted RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 NTRK3Q16288 839 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 CABP7Q86V35 215 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 NUP88Q99567 741 aaPredicted RBP12.54□□□□□ -0.4
TRIM3-211ENST00000532542 NBPF3Q9H094 633 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 TCP10L2B9ZVM9 353 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 CPLX3Q8WVH0 158 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 LTBP4Q8N2S1 1624 aa12.54□□□□□ -0.4
TRIM3-211ENST00000532542 GOLGA6L9A6NEM1 432 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 IKBKBO14920 756 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 RASGRP4Q8TDF6 673 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 SYNRGQ9UMZ2 1314 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 COL16A1Q07092 1604 aaPredicted RBP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 RASA1P20936 1047 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 SLC15A2Q16348 729 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 LONRF3Q496Y0 759 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 GSDMAQ96QA5 445 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 PHF20Q9BVI0 1012 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 AOC3Q16853 763 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 XIRP1Q702N8 1843 aaKnown RBP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 GTPBP6O43824 516 aaPredicted RBP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 ZNF500O60304 480 aaPredicted RBP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 CHURC1Q8WUH1 139 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 AK8Q96MA6 479 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 MAP7D2Q96T17 732 aa12.53□□□□□ -0.4
TRIM3-211ENST00000532542 RTFDC1Q9BY42 306 aaPredicted RBP12.53□□□□□ -0.4
TRIM3-211ENST00000532542 FOXP2O15409 715 aa12.52□□□□□ -0.4
TRIM3-211ENST00000532542 CHRNA5P30532 468 aa12.52□□□□□ -0.4
TRIM3-211ENST00000532542 ARHGAP29Q52LW3 1261 aa12.52□□□□□ -0.4
TRIM3-211ENST00000532542 FAM205AQ6ZU69 1335 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 RAD17O75943 681 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 PAK1Q13153 545 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 TMEM179Q6ZVK1 233 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 TXLNBQ8N3L3 684 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 STAMQ92783 540 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 HOOK2Q96ED9 719 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 SPZ1Q9BXG8 430 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 XPO4Q9C0E2 1151 aaKnown RBP12.52□□□□□ -0.41
TRIM3-211ENST00000532542 DEF6Q9H4E7 631 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 LUC7LQ9NQ29 371 aaKnown RBP12.52□□□□□ -0.41
TRIM3-211ENST00000532542 GJA3Q9Y6H8 435 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 WDHD1O75717 1129 aaPredicted RBP12.52□□□□□ -0.41
TRIM3-211ENST00000532542 CDC25BP30305 580 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 OSBPL5Q9H0X9 879 aaPredicted RBP12.52□□□□□ -0.41
TRIM3-211ENST00000532542 BARHL2Q9NY43 387 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 PCDHA1Q9Y5I3 950 aa12.52□□□□□ -0.41
TRIM3-211ENST00000532542 PPP1R12BO60237 982 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 SNW1Q13573 536 aaKnown RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 HAUS3Q68CZ6 603 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CNNM4Q6P4Q7 775 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms