RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GPKOWQ92917 476 aaPredicted RBP eCLIP23.77■■□□□ 1.4
VPS28-209ENST00000528142 CEP131Q9UPN4 1083 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 TRIM75PA6NK02 468 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 PRELPP51888 382 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 WWC2Q6AWC2 1192 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 METTL16Q86W50 562 aaKnown RBP23.76■■□□□ 1.39
VPS28-209ENST00000528142 CLEC10AQ8IUN9 316 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 FAM177A1Q8N128 213 aaPredicted RBP23.76■■□□□ 1.39
VPS28-209ENST00000528142 FAM200AQ8TCP9 573 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 CLIP2Q9UDT6 1046 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 PSME4Q14997 1843 aa23.76■■□□□ 1.39
VPS28-209ENST00000528142 FOXP4Q8IVH2 680 aaPredicted RBP23.75■■□□□ 1.39
VPS28-209ENST00000528142 CPVLQ9H3G5 476 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 BARHL2Q9NY43 387 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 ZNRF3Q9ULT6 936 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 ATRNL1Q5VV63 1379 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 STXBP3O00186 592 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 ATP2B1P20020 1258 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 ANO6Q4KMQ2 910 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 TATDN1Q6P1N9 297 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 LRRC47Q8N1G4 583 aaKnown RBP23.75■■□□□ 1.39
VPS28-209ENST00000528142 TIGD1Q96MW7 591 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 SDF4Q9BRK5 362 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 NOL7Q9UMY1 257 aaKnown RBP23.75■■□□□ 1.39
VPS28-209ENST00000528142 PCDHA4Q9UN74 947 aa23.75■■□□□ 1.39
VPS28-209ENST00000528142 SIPA1L1O43166 1804 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 ARFGEF1Q9Y6D6 1849 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 M0R2N6 131 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 WNT7AO00755 349 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 EIF6P56537 245 aaKnown RBP23.74■■□□□ 1.39
VPS28-209ENST00000528142 BLIDQ8IZY5 108 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 ZNF579Q8NAF0 562 aaKnown RBP23.74■■□□□ 1.39
VPS28-209ENST00000528142 DAGLBQ8NCG7 672 aa23.74■■□□□ 1.39
VPS28-209ENST00000528142 SRPRBQ9Y5M8 271 aaKnown RBP23.74■■□□□ 1.39
VPS28-209ENST00000528142 SPDYE2BA6NHP3 402 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 SPDYE6P0CI01 402 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 SYKP43405 635 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 GRIN1Q05586 938 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 ASPRV1Q53RT3 343 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 ZSCAN29Q8IWY8 852 aaPredicted RBP23.73■■□□□ 1.39
VPS28-209ENST00000528142 RIOX1Q9H6W3 641 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 BAZ2BQ9UIF8 2168 aaKnown RBP23.73■■□□□ 1.39
VPS28-209ENST00000528142 GREB1LQ9C091 1923 aaPredicted RBP23.73■■□□□ 1.39
VPS28-209ENST00000528142 COL2A1P02458 1487 aaPredicted RBP23.73■■□□□ 1.39
VPS28-209ENST00000528142 FAM196BA6NMK8 535 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 TRAPPC10P48553 1259 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 GALNT17Q6IS24 598 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 NIM1KQ8IY84 436 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 CCDC148Q8NFR7 591 aa23.73■■□□□ 1.39
VPS28-209ENST00000528142 MPHOSPH10O00566 681 aaKnown RBP23.72■■□□□ 1.39
VPS28-209ENST00000528142 BMP15O95972 392 aa23.72■■□□□ 1.39
VPS28-209ENST00000528142 PPP4R3BQ5MIZ7 849 aa23.72■■□□□ 1.39
VPS28-209ENST00000528142 TTC38Q5R3I4 469 aa23.72■■□□□ 1.39
VPS28-209ENST00000528142 PIK3AP1Q6ZUJ8 805 aa23.72■■□□□ 1.39
VPS28-209ENST00000528142 HEATR3Q7Z4Q2 680 aa23.72■■□□□ 1.39
VPS28-209ENST00000528142 RRP36Q96EU6 259 aaKnown RBP23.72■■□□□ 1.39
VPS28-209ENST00000528142 ZBTB12Q9Y330 459 aaPredicted RBP23.72■■□□□ 1.39
VPS28-209ENST00000528142 CAVIN2O95810 425 aa23.71■■□□□ 1.39
VPS28-209ENST00000528142 RASSF7Q02833 373 aa23.71■■□□□ 1.39
VPS28-209ENST00000528142 CERKLQ49MI3 558 aaPredicted RBP23.71■■□□□ 1.39
VPS28-209ENST00000528142 UBA5Q9GZZ9 404 aa23.71■■□□□ 1.39
VPS28-209ENST00000528142 CBX8Q9HC52 389 aa23.71■■□□□ 1.39
VPS28-209ENST00000528142 HDAC9Q9UKV0 1011 aa23.71■■□□□ 1.39
VPS28-209ENST00000528142 AGBL3Q8NEM8 1001 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 DNAJC25Q9H1X3 360 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 TAOK3Q9H2K8 898 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 KIAA1468Q9P260 1216 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 USP25Q9UHP3 1055 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 KCNH3Q9ULD8 1083 aa23.7■■□□□ 1.39
VPS28-209ENST00000528142 FRMPD2Q68DX3 1309 aaPredicted RBP23.7■■□□□ 1.39
VPS28-209ENST00000528142 ZNF543Q08ER8 600 aa23.7■■□□□ 1.38
VPS28-209ENST00000528142 STX1AQ16623 288 aa23.7■■□□□ 1.38
VPS28-209ENST00000528142 ERCC4Q92889 916 aaPredicted RBP23.7■■□□□ 1.38
VPS28-209ENST00000528142 MKL1Q969V6 931 aa23.7■■□□□ 1.38
VPS28-209ENST00000528142 PIGSQ96S52 555 aa23.7■■□□□ 1.38
VPS28-209ENST00000528142 ZMYND12Q9H0C1 365 aa23.7■■□□□ 1.38
VPS28-209ENST00000528142 CXCL9Q07325 125 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 DLGAP5Q15398 846 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 ZNF174Q15697 407 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 OGFOD1Q8N543 542 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 NYAP2Q9P242 653 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 ZNF70Q9UC06 446 aaPredicted RBP23.69■■□□□ 1.38
VPS28-209ENST00000528142 PCDHA6Q9UN73 950 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 PCDHA8Q9Y5H6 950 aa23.69■■□□□ 1.38
VPS28-209ENST00000528142 ZNF165P49910 485 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 SHROOM1Q2M3G4 852 aaPredicted RBP23.68■■□□□ 1.38
VPS28-209ENST00000528142 SPECC1Q5M775 1068 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 LUZP1Q86V48 1076 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 TRIM44Q96DX7 344 aaPredicted RBP23.68■■□□□ 1.38
VPS28-209ENST00000528142 SYT17Q9BSW7 474 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 TRIM34Q9BYJ4 488 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 KANSL2Q9H9L4 492 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 VAT1LQ9HCJ6 419 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 MYH8P13535 1937 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 ATP2C1P98194 919 aaPredicted RBP23.68■■□□□ 1.38
VPS28-209ENST00000528142 HOMER1Q86YM7 354 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 SIAH1Q8IUQ4 282 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 MTMR14Q8NCE2 650 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 CSRNP2Q9H175 543 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 FAM13BQ9NYF5 915 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms