RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 JAG1P78504 1218 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 ATP2B2Q01814 1243 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 TMTC3Q6ZXV5 915 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 LZTS2Q9BRK4 669 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 SHROOM1Q2M3G4 852 aaPredicted RBP21.79■■□□□ 1.08
VPS28-207ENST00000526977 CLEC10AQ8IUN9 316 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 SIAH1Q8IUQ4 282 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 WASF1Q92558 559 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 WDR90Q96KV7 1748 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 PALM3A6NDB9 673 aaPredicted RBP21.78■■□□□ 1.08
VPS28-207ENST00000526977 PARP1P09874 1014 aaKnown RBP21.78■■□□□ 1.08
VPS28-207ENST00000526977 PRAMEF18Q5VWM3 479 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 KRT26Q7Z3Y9 468 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 NBPF11Q86T75 865 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 LRRC47Q8N1G4 583 aaKnown RBP21.78■■□□□ 1.08
VPS28-207ENST00000526977 SLC26A6Q9BXS9 759 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 RNF26Q9BY78 433 aaPredicted RBP21.78■■□□□ 1.08
VPS28-207ENST00000526977 MAD2L2Q9UI95 211 aa21.78■■□□□ 1.08
VPS28-207ENST00000526977 KIF28PB7ZC32 967 aa21.77■■□□□ 1.08
VPS28-207ENST00000526977 KIF23Q02241 960 aaPredicted RBP21.77■■□□□ 1.08
VPS28-207ENST00000526977 KRT40Q6A162 431 aa21.77■■□□□ 1.08
VPS28-207ENST00000526977 BRAPQ7Z569 592 aa21.77■■□□□ 1.08
VPS28-207ENST00000526977 ARHGEF10LQ9HCE6 1279 aa21.77■■□□□ 1.08
VPS28-207ENST00000526977 ZNF112Q9UJU3 913 aa21.77■■□□□ 1.08
VPS28-207ENST00000526977 UBE2Q2LH0YL09 131 aa21.77■■□□□ 1.07
VPS28-207ENST00000526977 SNHG28P0DPA3 235 aa21.77■■□□□ 1.07
VPS28-207ENST00000526977 PDHBP11177 359 aa21.77■■□□□ 1.07
VPS28-207ENST00000526977 AKAP17AQ02040 695 aaKnown RBP21.77■■□□□ 1.07
VPS28-207ENST00000526977 EAPPQ56P03 285 aaPredicted RBP21.77■■□□□ 1.07
VPS28-207ENST00000526977 CCDC82Q8N4S0 544 aa21.77■■□□□ 1.07
VPS28-207ENST00000526977 RTEL1Q9NZ71 1219 aa21.77■■□□□ 1.07
VPS28-207ENST00000526977 PLEKHA8P1O95397 391 aa21.76■■□□□ 1.07
VPS28-207ENST00000526977 SMARCA1P28370 1054 aa21.76■■□□□ 1.07
VPS28-207ENST00000526977 FUT2Q10981 343 aa21.76■■□□□ 1.07
VPS28-207ENST00000526977 CMTR1Q8N1G2 835 aaKnown RBP21.76■■□□□ 1.07
VPS28-207ENST00000526977 SRBD1Q8N5C6 995 aaKnown RBP21.76■■□□□ 1.07
VPS28-207ENST00000526977 MTMR7Q9Y216 660 aa21.76■■□□□ 1.07
VPS28-207ENST00000526977 PRPF3O43395 683 aaKnown RBP21.75■■□□□ 1.07
VPS28-207ENST00000526977 DEXIO95424 95 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 VEGFAP15692 232 aaPredicted RBP21.75■■□□□ 1.07
VPS28-207ENST00000526977 ASPRV1Q53RT3 343 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 DACT1Q9NYF0 836 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 MYH15Q9Y2K3 1946 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 USP17L5A8MUK1 530 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 MYSM1Q5VVJ2 828 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 STAG2Q8N3U4 1231 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 GMCL1P1Q8NEA9 526 aa21.75■■□□□ 1.07
VPS28-207ENST00000526977 KLRF2D3W0D1 207 aa21.74■■□□□ 1.07
VPS28-207ENST00000526977 GPATCH4Q5T3I0 446 aaKnown RBP21.74■■□□□ 1.07
VPS28-207ENST00000526977 USP17L2Q6R6M4 530 aa21.74■■□□□ 1.07
VPS28-207ENST00000526977 BICD2Q8TD16 824 aa21.74■■□□□ 1.07
VPS28-207ENST00000526977 FUCA2Q9BTY2 467 aa21.74■■□□□ 1.07
VPS28-207ENST00000526977 SH2D4AQ9H788 454 aa21.74■■□□□ 1.07
VPS28-207ENST00000526977 ADM5C9JUS6 153 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 RNF214Q8ND24 703 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 KLRG1Q96E93 195 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 TMX2Q9Y320 296 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 CLIC4Q9Y696 253 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 V9GY48 417 aaPredicted RBP21.73■■□□□ 1.07
VPS28-207ENST00000526977 POLR2AP24928 1970 aaKnown RBP21.73■■□□□ 1.07
VPS28-207ENST00000526977 F5H6K3 240 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 NR1I2O75469 434 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 KLRC3Q07444 240 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 TRIM29Q14134 588 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 DCAF4Q8WV16 495 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 WRNIP1Q96S55 665 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 NUP62CLQ9H1M0 184 aa21.73■■□□□ 1.07
VPS28-207ENST00000526977 DDX19AQ9NUU7 478 aaKnown RBP21.73■■□□□ 1.07
VPS28-207ENST00000526977 PPP1R12BO60237 982 aaPredicted RBP21.72■■□□□ 1.07
VPS28-207ENST00000526977 NF2P35240 595 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 ZNF543Q08ER8 600 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 SLFN13Q68D06 897 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 LINC00301Q8NCQ3 95 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 CNTNAP5Q8WYK1 1306 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 A0A1W2PRG0 241 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 GOLGA8HP0CJ92 632 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 INPP5BP32019 993 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 CAMK4Q16566 473 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 SCYL3Q8IZE3 742 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 ANP32BQ92688 251 aaKnown RBP21.72■■□□□ 1.07
VPS28-207ENST00000526977 GMCL1Q96IK5 515 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 PPP1R9BQ96SB3 815 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 SPZ1Q9BXG8 430 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 RRAGCQ9HB90 399 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 POLR3EQ9NVU0 708 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 CLEC11AQ9Y240 323 aa21.72■■□□□ 1.07
VPS28-207ENST00000526977 U2AF2P26368 475 aaKnown RBP eCLIP21.71■■□□□ 1.07
VPS28-207ENST00000526977 SLC1A4P43007 532 aa21.71■■□□□ 1.07
VPS28-207ENST00000526977 CCAR1Q8IX12 1150 aaKnown RBP21.71■■□□□ 1.07
VPS28-207ENST00000526977 GOPCQ9HD26 462 aa21.71■■□□□ 1.07
VPS28-207ENST00000526977 MYH4Q9Y623 1939 aa21.71■■□□□ 1.07
VPS28-207ENST00000526977 USP2O75604 605 aaPredicted RBP21.7■■□□□ 1.06
VPS28-207ENST00000526977 XBP1P17861 261 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 ME1P48163 572 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 CCDC173Q0VFZ6 552 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 CLSTN2Q9H4D0 955 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 PICK1Q9NRD5 415 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 PCDHA7Q9UN72 937 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 SSC5DA1L4H1 1573 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 RAD21O60216 631 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms