RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 BSDC1Q9NW68 430 aaPredicted RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 CCDC39Q9UFE4 941 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 TPX2Q9ULW0 747 aaKnown RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 PCDHB14Q9Y5E9 798 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 MCM4P33991 863 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 OXCT1P55809 520 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 SLFN12Q8IYM2 578 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 NETO1Q8TDF5 533 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 EHMT1Q9H9B1 1298 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 KLHL3Q9UH77 587 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 MAPK8IP1Q9UQF2 711 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 ARHGEF12Q9NZN5 1544 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 DENND4BO75064 1496 aaPredicted RBP6.53□□□□□ -1.36
USP48-211ENST00000526044 MBD5Q9P267 1494 aa6.53□□□□□ -1.36
USP48-211ENST00000526044 SPAG9O60271 1321 aaKnown RBP6.52□□□□□ -1.37
USP48-211ENST00000526044 ABCC5O15440 1437 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 TRAPPC8Q9Y2L5 1435 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 GNAT3A8MTJ3 354 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 CHURC1-FNTBB4DL54 471 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 PRNPP04156 253 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 CYP7A1P22680 504 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 SFRP5Q5T4F7 317 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 GK5Q6ZS86 529 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 CDH24Q86UP0 819 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 PLD6Q8N2A8 252 aaKnown RBP6.52□□□□□ -1.37
USP48-211ENST00000526044 AGBL5Q8NDL9 886 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 CYB5D2Q8WUJ1 264 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 RRP7BPQ9NSQ0 103 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 CEP131Q9UPN4 1083 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.52□□□□□ -1.37
USP48-211ENST00000526044 ARHGEF5Q12774 1597 aa6.52□□□□□ -1.37
USP48-211ENST00000526044 DAPK1P53355 1430 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 ABCC1P33527 1531 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 SYCP2Q9BX26 1530 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 SLC22A31A6NKX4 558 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 CEACAM5P06731 702 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 ETV3P41162 512 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 CLCQ05315 142 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 IFI16Q16666 785 aaKnown RBP6.51□□□□□ -1.37
USP48-211ENST00000526044 CBLL1Q75N03 491 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 COX4I2Q96KJ9 171 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 U3KQE9 123 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 CCDC141Q6ZP82 1450 aa6.51□□□□□ -1.37
USP48-211ENST00000526044 DNMT1P26358 1616 aaKnown RBP6.5□□□□□ -1.37
USP48-211ENST00000526044 ZNF518AQ6AHZ1 1483 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 ANKRD30AQ9BXX3 1397 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 TMEM265A0A087WTH1 108 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 E9PSI1 815 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 TCF3P15923 654 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 ITIH2P19823 946 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 PAK2Q13177 524 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 LRRFIP1Q32MZ4 808 aaKnown RBP6.5□□□□□ -1.37
USP48-211ENST00000526044 C22orf34Q6ZV56 151 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 STK11IPQ8N1F8 1099 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 MISP3Q96FF7 219 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 SPATA32Q96LK8 384 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 CCDC74BQ96LY2 380 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 TGIF2Q9GZN2 237 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 GMIPQ9P107 970 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 VAV3Q9UKW4 847 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 PLAGL2Q9UPG8 496 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 SNX11Q9Y5W9 270 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 RICTORQ6R327 1708 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 RTEL1-TNFRSF6BF6WH68 1400 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 PTPRKQ15262 1439 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 CNTNAP4Q9C0A0 1308 aa6.5□□□□□ -1.37
USP48-211ENST00000526044 DNAJA2O60884 412 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 ITGB5P18084 799 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 PHACTR4Q8IZ21 702 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 FLCNQ8NFG4 579 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 DNAJB8Q8NHS0 232 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 PPP1R13LQ8WUF5 828 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 TNKS2Q9H2K2 1166 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 SLC5A6Q9Y289 635 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 KDM6BO15054 1643 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 NCOA1Q15788 1441 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 C9orf84Q5VXU9 1444 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 POGZQ7Z3K3 1410 aa6.49□□□□□ -1.37
USP48-211ENST00000526044 MLH3Q9UHC1 1453 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 ROCK1Q13464 1354 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 FAM155AB1AL88 458 aaPredicted RBP6.48□□□□□ -1.37
USP48-211ENST00000526044 CBX7O95931 251 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 ZNF865P0CJ78 1059 aaPredicted RBP6.48□□□□□ -1.37
USP48-211ENST00000526044 IMPDH2P12268 514 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 KIR3DL1P43629 444 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 TNNI2P48788 182 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 PRKCQQ04759 706 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 RAD51AP2Q09MP3 1159 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 COL9A2Q14055 689 aaPredicted RBP6.48□□□□□ -1.37
USP48-211ENST00000526044 NKPD1Q17RQ9 610 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 ARSHQ5FYA8 562 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 CDCP2Q5VXM1 449 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 SPACA3Q8IXA5 215 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 MFSD4AQ8N468 514 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 BCL7CQ8WUZ0 217 aaPredicted RBP6.48□□□□□ -1.37
USP48-211ENST00000526044 HRASLS5Q96KN8 279 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 KIF2CQ99661 725 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 MAST1Q9Y2H9 1570 aa6.48□□□□□ -1.37
USP48-211ENST00000526044 MAGI2Q86UL8 1455 aa6.47□□□□□ -1.37
USP48-211ENST00000526044 CROCC2H7BZ55 1655 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms