RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TANGO6	Q9C0B7	1094 aa		24.33	■■□□□ 1.49
CD44-222	ENST00000526025	LY9	Q9HBG7	655 aa		24.33	■■□□□ 1.49
CD44-222	ENST00000526025	HSPA1A	P0DMV8	641 aa	Known RBP	24.32	■■□□□ 1.48
CD44-222	ENST00000526025	HSPA1B	P0DMV9	641 aa	Known RBP	24.32	■■□□□ 1.48
CD44-222	ENST00000526025	BMP3	P12645	472 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	SLC1A4	P43007	532 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	COL9A3	Q14050	684 aa	Predicted RBP	24.32	■■□□□ 1.48
CD44-222	ENST00000526025	COG2	Q14746	738 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	FAM83B	Q5T0W9	1011 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	CHST3	Q7LGC8	479 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	ZSWIM6	Q9HCJ5	1215 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	HOXC10	Q9NYD6	342 aa		24.32	■■□□□ 1.48
CD44-222	ENST00000526025	CYP2C8	P10632	490 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	PDHB	P11177	359 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	RPS6KB1	P23443	525 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	HERVK_113	P62684	666 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	SGMS1	Q86VZ5	419 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	SMCR8	Q8TEV9	937 aa	Predicted RBP	24.31	■■□□□ 1.48
CD44-222	ENST00000526025	BACH2	Q9BYV9	841 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	UPF2	Q9HAU5	1272 aa	Known RBP	24.31	■■□□□ 1.48
CD44-222	ENST00000526025	FEM1B	Q9UK73	627 aa		24.31	■■□□□ 1.48
CD44-222	ENST00000526025	RAD21	O60216	631 aa		24.3	■■□□□ 1.48
CD44-222	ENST00000526025	CAST	P20810	708 aa	Known RBP	24.3	■■□□□ 1.48
CD44-222	ENST00000526025	RUFY3	Q7L099	469 aa		24.3	■■□□□ 1.48
CD44-222	ENST00000526025	P2RX7	Q99572	595 aa	Known RBP	24.3	■■□□□ 1.48
CD44-222	ENST00000526025	COL11A1	P12107	1806 aa	Predicted RBP	24.29	■■□□□ 1.48
CD44-222	ENST00000526025	FLOT1	O75955	427 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	TBC1D8	O95759	1140 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	BCR	P11274	1271 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	DSG3	P32926	999 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	RBM25	P49756	843 aa	Known RBP	24.29	■■□□□ 1.48
CD44-222	ENST00000526025	GPATCH4	Q5T3I0	446 aa	Known RBP	24.29	■■□□□ 1.48
CD44-222	ENST00000526025	C17orf99	Q6UX52	265 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	FAM160B2	Q86V87	743 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	MB21D1	Q8N884	522 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	MAP3K14	Q99558	947 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	NUP88	Q99567	741 aa	Predicted RBP	24.29	■■□□□ 1.48
CD44-222	ENST00000526025	AGXT2	Q9BYV1	514 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	PPP1R9A	Q9ULJ8	1098 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	ADAMTS5	Q9UNA0	930 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	CYP46A1	Q9Y6A2	500 aa		24.29	■■□□□ 1.48
CD44-222	ENST00000526025	SPDYE16	A6NNV3	312 aa	Predicted RBP	24.28	■■□□□ 1.48
CD44-222	ENST00000526025	DDAH1	O94760	285 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	CTCF	P49711	727 aa	Predicted RBP	24.28	■■□□□ 1.48
CD44-222	ENST00000526025	STAT2	P52630	851 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	ZNF543	Q08ER8	600 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	ASPRV1	Q53RT3	343 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	CHURC1	Q8WUH1	139 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	SLF1	Q9BQI6	1058 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	MORF4L1	Q9UBU8	362 aa		24.28	■■□□□ 1.48
CD44-222	ENST00000526025	GPR25	O00155	361 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	FOXN1	O15353	648 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	FDX1	P10109	184 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	TROAP	Q12815	778 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	FAM110C	Q1W6H9	321 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	BTNL9	Q6UXG8	535 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	CATIP	Q7Z7H3	387 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	PRPF38A	Q8NAV1	312 aa	Known RBP	24.27	■■□□□ 1.48
CD44-222	ENST00000526025	C22orf23	Q9BZE7	217 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	R3HDML	Q9H3Y0	253 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	SENP2	Q9HC62	589 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	RABGAP1	Q9Y3P9	1069 aa		24.27	■■□□□ 1.48
CD44-222	ENST00000526025	MGAM	O43451	1857 aa		24.26	■■□□□ 1.47
CD44-222	ENST00000526025	CCDC69	A6NI79	296 aa		24.26	■■□□□ 1.47
CD44-222	ENST00000526025	HSPA8	P11142	646 aa	Known RBP	24.26	■■□□□ 1.47
CD44-222	ENST00000526025	RCAN1	P53805	252 aa		24.26	■■□□□ 1.47
CD44-222	ENST00000526025	CCDC96	Q2M329	555 aa		24.26	■■□□□ 1.47
CD44-222	ENST00000526025	TMEM232	C9JQI7	657 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	PARP1	P09874	1014 aa	Known RBP	24.25	■■□□□ 1.47
CD44-222	ENST00000526025	CALM1	P0DP23	149 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	CALM2	P0DP24	149 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	CALM3	P0DP25	149 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	ZNF654	Q8IZM8	581 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	IL27	Q8NEV9	243 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	LRRC2	Q9BYS8	371 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	24.25	■■□□□ 1.47
CD44-222	ENST00000526025	GPHN	Q9NQX3	736 aa	Predicted RBP	24.25	■■□□□ 1.47
CD44-222	ENST00000526025	FBXO28	Q9NVF7	368 aa		24.25	■■□□□ 1.47
CD44-222	ENST00000526025	CPA1	P15085	419 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	GRM4	Q14833	912 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	NFXL1	Q6ZNB6	911 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	KCTD1	Q719H9	257 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	RASGRP2	Q7LDG7	609 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	TCEANC2	Q96MN5	208 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	RBPJL	Q9UBG7	517 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	CPA4	Q9UI42	421 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	SLC12A7	Q9Y666	1083 aa		24.24	■■□□□ 1.47
CD44-222	ENST00000526025	VWA5A	O00534	786 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	FKTN	O75072	461 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	FGD1	P98174	961 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	SP3	Q02447	781 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	POTEE	Q6S8J3	1075 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025		Q6ZUG5	572 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	ATG4C	Q96DT6	458 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	MTMR7	Q9Y216	660 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	CASP8AP2	Q9UKL3	1982 aa		24.23	■■□□□ 1.47
CD44-222	ENST00000526025	PALM3	A6NDB9	673 aa	Predicted RBP	24.22	■■□□□ 1.47
CD44-222	ENST00000526025	EVC	P57679	992 aa		24.22	■■□□□ 1.47
CD44-222	ENST00000526025	APOA5	Q6Q788	366 aa		24.22	■■□□□ 1.47
CD44-222	ENST00000526025	SYNE3	Q6ZMZ3	975 aa		24.22	■■□□□ 1.47

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