RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 SMARCA5O60264 1052 aaPredicted RBP7.93□□□□□ -1.14
CD44-221ENST00000526000 IGHA2P01877 340 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 RARBP10826 455 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 RAG1P15918 1043 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 STAT3P40763 770 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 FAM109BQ6ICB4 259 aaPredicted RBP7.93□□□□□ -1.14
CD44-221ENST00000526000 CPXCR1Q8N123 301 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 MROH8Q9H579 483 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 TMEM39AQ9NV64 488 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 TMX2Q9Y320 296 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 SLC4A4Q9Y6R1 1079 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 ATAD5Q96QE3 1844 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 MYO5AQ9Y4I1 1855 aaKnown RBP7.92□□□□□ -1.14
CD44-221ENST00000526000 MINDY4BA8MYZ0 360 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 ADD2P35612 726 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 KCTD2Q14681 263 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 C12orf60Q5U649 245 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 SIRT2Q8IXJ6 389 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 SHCBP1Q8NEM2 672 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 KIF1BPQ96EK5 621 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 DDX11Q96FC9 970 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 RNPC3Q96LT9 517 aaKnown RBP7.92□□□□□ -1.14
CD44-221ENST00000526000 TINF2Q9BSI4 451 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 PRDM6Q9NQX0 595 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 PAG1Q9NWQ8 432 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 SWAP70Q9UH65 585 aa7.92□□□□□ -1.14
CD44-221ENST00000526000 ZHX1Q9UKY1 873 aaPredicted RBP7.92□□□□□ -1.14
CD44-221ENST00000526000 ISY1Q9ULR0 285 aaKnown RBP7.92□□□□□ -1.14
CD44-221ENST00000526000 MYADML2A6NDP7 307 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 GRXCR1A8MXD5 290 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 VWA5AO00534 786 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 IGSF3O75054 1194 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 SLC25A27O95847 323 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 CLTBP09497 229 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 ZNF865P0CJ78 1059 aaPredicted RBP7.91□□□□□ -1.14
CD44-221ENST00000526000 ACRP10323 421 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 FOSL2P15408 326 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 GRIN2CQ14957 1233 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 KCNA10Q16322 511 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 ZNF792Q3KQV3 632 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 HSP90AB4PQ58FF6 505 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 CTR9Q6PD62 1173 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 RNF180Q86T96 592 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 RIOX2Q8IUF8 465 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 MB21D1Q8N884 522 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 CCDC17Q96LX7 622 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 PUS7LQ9H0K6 701 aaKnown RBP7.91□□□□□ -1.14
CD44-221ENST00000526000 RAVER2Q9HCJ3 691 aaKnown RBP7.91□□□□□ -1.14
CD44-221ENST00000526000 CLIP2Q9UDT6 1046 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 PHF24Q9UPV7 400 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 RIPK3Q9Y572 518 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 CTDP1Q9Y5B0 961 aaPredicted RBP7.91□□□□□ -1.14
CD44-221ENST00000526000 TACC3Q9Y6A5 838 aa7.91□□□□□ -1.14
CD44-221ENST00000526000 A0A1W2PQ45 241 aaPredicted RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 A0A1W2PQY0 241 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 DCDC2CA8MYV0 355 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 F5H6K3 240 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 WDR46O15213 610 aaKnown RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 PRDM1O75626 825 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 SNAI1O95863 264 aaPredicted RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 PTGS1P23219 599 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 SNAP25P60880 206 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 SMAD3P84022 425 aaKnown RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 KLRC3Q07444 240 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 FAAP100Q0VG06 881 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 CCDC85BQ15834 202 aaPredicted RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 TSHZ3Q63HK5 1081 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 SNRNP48Q6IEG0 339 aaKnown RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 CCDC129Q6ZRS4 1044 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 NOL8Q76FK4 1167 aaKnown RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 AMOTL1Q8IY63 956 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 ABRAQ8N0Z2 381 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 USP38Q8NB14 1042 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 KIFC2Q96AC6 838 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 DDRGK1Q96HY6 314 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.9□□□□□ -1.14
CD44-221ENST00000526000 PPP1R12CQ9BZL4 782 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 SH2D4AQ9H788 454 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 KANSL2Q9H9L4 492 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 MKNK2Q9HBH9 465 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 GOPCQ9HD26 462 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 STARD7Q9NQZ5 370 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 ATP8A2Q9NTI2 1148 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 FAM184BQ9ULE4 1060 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 PPP1R9AQ9ULJ8 1098 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 CNPY2Q9Y2B0 182 aa7.9□□□□□ -1.14
CD44-221ENST00000526000 DDX49Q9Y6V7 483 aaKnown RBP7.9□□□□□ -1.14
CD44-221ENST00000526000 SMCHD1A6NHR9 2005 aa7.9□□□□□ -1.15
CD44-221ENST00000526000 MYH1P12882 1939 aa7.9□□□□□ -1.15
CD44-221ENST00000526000 ZBED4O75132 1171 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 RAB11FIP3O75154 756 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 APPP05067 770 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 C6orf222P0C671 652 aaPredicted RBP7.89□□□□□ -1.15
CD44-221ENST00000526000 AKR1A1P14550 325 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 ATP5JP18859 108 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 PBX2P40425 430 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 ACLYP53396 1101 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 BEX3Q00994 111 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 FPGSQ05932 587 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 SNX17Q15036 470 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms