RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GP6Q9HCN6 339 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 ARHGEF4Q9NR80 690 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 APEX2Q9UBZ4 518 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 EIF4G1Q04637 1599 aaKnown RBP6.61□□□□□ -1.35
CD44-220ENST00000525688 ITGAVP06756 1048 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 GYS2P54840 703 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 CDK5R2Q13319 367 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 HSP90AA2PQ14568 343 aaPredicted RBP6.6□□□□□ -1.35
CD44-220ENST00000525688 TAF7LQ5H9L4 462 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 BEND4Q6ZU67 534 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 ADAT2Q7Z6V5 191 aaKnown RBP6.6□□□□□ -1.35
CD44-220ENST00000525688 ANKRD13AQ8IZ07 590 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 ARHGEF39Q8N4T4 335 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 TOP6BLQ8N6T0 577 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 LRRN4CLQ8ND94 238 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 BVESQ8NE79 360 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 KISS1RQ969F8 398 aaPredicted RBP6.6□□□□□ -1.35
CD44-220ENST00000525688 FGD4Q96M96 766 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 PCDHB12Q9Y5F1 795 aa6.6□□□□□ -1.35
CD44-220ENST00000525688 TRAV20A0A0B4J274 112 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 FGFR1P11362 822 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 ITGA4P13612 1032 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 ZNF445P59923 1031 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 PPP2R2AP63151 447 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 NFKBIBQ15653 356 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 TKFCQ3LXA3 575 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 FOXB2Q5VYV0 432 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 C22orf34Q6ZV56 151 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 ZNF227Q86WZ6 799 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 SCUBE1Q8IWY4 988 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 GATA6Q92908 595 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 MRGPRX3Q96LB0 322 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 AARSD1Q9BTE6 412 aaKnown RBP6.59□□□□□ -1.35
CD44-220ENST00000525688 DHRS4Q9BTZ2 278 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 KCNF1Q9H3M0 494 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 LRP2BPQ9P2M1 347 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 DIS3Q9Y2L1 958 aaKnown RBP6.59□□□□□ -1.35
CD44-220ENST00000525688 EMC9Q9Y3B6 208 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 FHOD1Q9Y613 1164 aa6.59□□□□□ -1.35
CD44-220ENST00000525688 CNTNAP4Q9C0A0 1308 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 IGF2BP3O00425 579 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-220ENST00000525688 PPP1R12AO14974 1030 aaPredicted RBP6.58□□□□□ -1.36
CD44-220ENST00000525688 LEFTY1O75610 366 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 RFPL3O75679 317 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 ASMTLO95671 621 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 KIR3DL1P43629 444 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 CHRNA4P43681 627 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 PTPROQ16827 1216 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 POMZP3Q6PJE2 187 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 OGFOD3Q6PK18 319 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 CD163Q86VB7 1156 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 CRACR2BQ8N4Y2 399 aaPredicted RBP6.58□□□□□ -1.36
CD44-220ENST00000525688 SYTL5Q8TDW5 730 aaPredicted RBP6.58□□□□□ -1.36
CD44-220ENST00000525688 GPATCH3Q96I76 525 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 EXOC2Q96KP1 924 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 SPC25Q9HBM1 224 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 IFT57Q9NWB7 429 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 TPX2Q9ULW0 747 aaKnown RBP6.58□□□□□ -1.36
CD44-220ENST00000525688 PLAAQ9Y263 795 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 SUGT1Q9Y2Z0 365 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 CC2D2AQ9P2K1 1620 aa6.58□□□□□ -1.36
CD44-220ENST00000525688 DNAJC25-GNG10A0A024R161 153 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 FAM181BA6NEQ2 426 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 RNF225M0QZC1 329 aaPredicted RBP6.57□□□□□ -1.36
CD44-220ENST00000525688 NOP56O00567 594 aaKnown RBP6.57□□□□□ -1.36
CD44-220ENST00000525688 DNAJC6O75061 913 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 FAM87AP0C7U9 286 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 DALRD3Q5D0E6 543 aaKnown RBP6.57□□□□□ -1.36
CD44-220ENST00000525688 SFRP5Q5T4F7 317 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 GPAT2Q6NUI2 795 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 TRIM59Q8IWR1 403 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 ZCRB1Q8TBF4 217 aaKnown RBP6.57□□□□□ -1.36
CD44-220ENST00000525688 PRDM14Q9GZV8 571 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 PRDM5Q9NQX1 630 aaPredicted RBP6.57□□□□□ -1.36
CD44-220ENST00000525688 FBXL21Q9UKT6 434 aa6.57□□□□□ -1.36
CD44-220ENST00000525688 TRBV23-1A0A0A0MS06 115 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 LRRN2O75325 713 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 ZNF865P0CJ78 1059 aaPredicted RBP6.56□□□□□ -1.36
CD44-220ENST00000525688 L1CAMP32004 1257 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 GRB10Q13322 594 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 NOL9Q5SY16 702 aaKnown RBP6.56□□□□□ -1.36
CD44-220ENST00000525688 YOD1Q5VVQ6 348 aaPredicted RBP6.56□□□□□ -1.36
CD44-220ENST00000525688 FILIP1Q7Z7B0 1213 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 ZAR1Q86SH2 424 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 CERS3Q8IU89 383 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 NINJ1Q92982 152 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 PPP1R14AQ96A00 147 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 DCAF5Q96JK2 942 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 Q96M66 194 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 CDC6Q99741 560 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 CGGBP1Q9UFW8 167 aaPredicted RBP6.56□□□□□ -1.36
CD44-220ENST00000525688 GTF2IRD1Q9UHL9 959 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 KCNH3Q9ULD8 1083 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 AKT3Q9Y243 479 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 RAXQ9Y2V3 346 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 MRPS23Q9Y3D9 190 aaKnown RBP6.56□□□□□ -1.36
CD44-220ENST00000525688 CD2APQ9Y5K6 639 aa6.56□□□□□ -1.36
CD44-220ENST00000525688 C1QTNF9BB2RNN3 333 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 PLD2O14939 933 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 PABPC1P11940 636 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms