RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	SEMA7A	O75326	666 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	BPNT1	O95861	308 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	TMEM253	P0C7T8	217 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	LTK	P29376	864 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	POLR2B	P30876	1174 aa	Known RBP	3.24	□□□□□ -1.89
CD44-212	ENST00000524922	NMI	Q13287	307 aa	Predicted RBP	3.24	□□□□□ -1.89
CD44-212	ENST00000524922	SNX17	Q15036	470 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	OXR1	Q8N573	874 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	ANKS4B	Q8N8V4	417 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	DAGLB	Q8NCG7	672 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	ENOX1	Q8TC92	643 aa	Known RBP	3.24	□□□□□ -1.89
CD44-212	ENST00000524922	HHIPL1	Q96JK4	782 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	SLC6A17	Q9H1V8	727 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	CNNM2	Q9H8M5	875 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	3.24	□□□□□ -1.89
CD44-212	ENST00000524922	BRMS1	Q9HCU9	246 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	ADAMTS1	Q9UHI8	967 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	ROBO2	Q9HCK4	1378 aa		3.24	□□□□□ -1.89
CD44-212	ENST00000524922	NCAN	O14594	1321 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	TEX51	A0A1B0GUA7	166 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	MINDY4B	A8MYZ0	360 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	SHOX	O15266	292 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	TLR3	O15455	904 aa	Known RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	INHBB	P09529	407 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	CTSK	P43235	329 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	YBX1	P67809	324 aa	Known RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	XPC	Q01831	940 aa	Predicted RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	CHRNE	Q04844	493 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	SSPN	Q14714	243 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ARSH	Q5FYA8	562 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	OVOS1	Q6IE37	1185 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ZPBP2	Q6X784	338 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	RNF111	Q6ZNA4	994 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ZNF655	Q8N720	491 aa	Predicted RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	LINC00116	Q8NCU8	138 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	DHX38	Q92620	1227 aa	Known RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	KCNN1	Q92952	543 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ATG4C	Q96DT6	458 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	TCTN2	Q96GX1	697 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	MAP6	Q96JE9	813 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	KCNC2	Q96PR1	638 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	PLCD4	Q9BRC7	762 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	SGPP1	Q9BX95	441 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ANTXR1	Q9H6X2	564 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	GMIP	Q9P107	970 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	MBD1	Q9UIS9	605 aa	Predicted RBP	3.23	□□□□□ -1.89
CD44-212	ENST00000524922	MINPP1	Q9UNW1	487 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	ADAMTS20	P59510	1910 aa		3.23	□□□□□ -1.89
CD44-212	ENST00000524922	UNC13A	Q9UPW8	1703 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922		A0A0G2JLL6	359 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-212	ENST00000524922	TCAF2	A6NFQ2	919 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	MEIS3P2	A8K0S8	358 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	HRK	O00198	91 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	PRRG2	O14669	202 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	NRDC	O43847	1150 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	USP2	O75604	605 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-212	ENST00000524922	HOXA5	P20719	270 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	EIF4A3	P38919	411 aa	Known RBP	3.22	□□□□□ -1.89
CD44-212	ENST00000524922	KRTAP10-2	P60368	255 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	CLC	Q05315	142 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	PWP1	Q13610	501 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	KIR3DS1	Q14943	382 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	SNAP47	Q5SQN1	464 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	ZNF605	Q86T29	641 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	RELL1	Q8IUW5	271 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	TMEM192	Q8IY95	271 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	ZNF296	Q8WUU4	475 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-212	ENST00000524922	FOXP3	Q9BZS1	431 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	PCDHB14	Q9Y5E9	798 aa		3.22	□□□□□ -1.89
CD44-212	ENST00000524922	FADS2P1	A8MWK0	482 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	IRS4	O14654	1257 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	TNFRSF10C	O14798	259 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	SIGLEC6	O43699	453 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	NUAK1	O60285	661 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	TRIM13	O60858	407 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	PRAMEF1	O95521	474 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	ACR	P10323	421 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	BUD31	P41223	144 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	KIR2DL1	P43626	348 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	KIR2DL2	P43627	348 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	TNNI2	P48788	182 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	ERVFRD-1	P60508	538 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	DUSP4	Q13115	394 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	CIAPIN1	Q6FI81	312 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	SPPL2C	Q8IUH8	684 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	AEBP1	Q8IUX7	1158 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	SLITRK4	Q8IW52	837 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	PHACTR4	Q8IZ21	702 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	REXO1	Q8N1G1	1221 aa	Known RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	TMEM52	Q8NDY8	209 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	PANK1	Q8TE04	598 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	DACT3	Q96B18	629 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	PRDM14	Q9GZV8	571 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	3.21	□□□□□ -1.9
CD44-212	ENST00000524922	IRF2BPL	Q9H1B7	796 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	CNTD2	Q9H8S5	307 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	CRTAC1	Q9NQ79	661 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	UBP1	Q9NZI7	540 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	VTI1B	Q9UEU0	232 aa		3.21	□□□□□ -1.9
CD44-212	ENST00000524922	GPR160	Q9UJ42	338 aa		3.21	□□□□□ -1.9

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