RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TSPY2A6NKD2 308 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 GTPBP6O43824 516 aaPredicted RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 CASP14P31944 242 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 RRAGBQ5VZM2 374 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 TBC1D9BQ66K14 1250 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 RSRC2Q7L4I2 434 aaKnown RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 CCDC12Q8WUD4 166 aaPredicted RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 IRX2Q9BZI1 471 aaPredicted RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 ST7Q9NRC1 585 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 LIMA1Q9UHB6 759 aaKnown RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 LRRC10BA6NIK2 292 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 COBLO75128 1261 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 GYPCP04921 128 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 KRT31Q15323 416 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 ARL6IP4Q66PJ3 421 aaKnown RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 CNGA4Q8IV77 575 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 GPR161Q8N6U8 529 aaKnown RBP12.54□□□□□ -0.4
HDAC9-228ENST00000524023 C4orf32Q8N8J7 132 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 CCDC51Q96ER9 411 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 LZTFL1Q9NQ48 299 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 RWDD2AQ9UIY3 292 aa12.54□□□□□ -0.4
HDAC9-228ENST00000524023 FECHP22830 423 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 CALML3P27482 149 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 KIF5BP33176 963 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 LONP1P36776 959 aaKnown RBP12.53□□□□□ -0.4
HDAC9-228ENST00000524023 PLA2G4AP47712 749 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 FXR1P51114 621 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC9-228ENST00000524023 RASGRP2Q7LDG7 609 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 ANKRD2Q9GZV1 360 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 EPC1Q9H2F5 836 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 RGL2O15211 777 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 CCT6AP40227 531 aaKnown RBP12.53□□□□□ -0.4
HDAC9-228ENST00000524023 PAK1Q13153 545 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 TEX35Q5T0J7 233 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 ZNF658Q5TYW1 1059 aaPredicted RBP12.53□□□□□ -0.4
HDAC9-228ENST00000524023 TMED8Q6PL24 325 aaPredicted RBP12.53□□□□□ -0.4
HDAC9-228ENST00000524023 BLIDQ8IZY5 108 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 NLRP3Q96P20 1036 aa12.53□□□□□ -0.4
HDAC9-228ENST00000524023 FAM205AQ6ZU69 1335 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 A0A0U1RQJ8 604 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 N4BP3O15049 544 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 ATP8B1O43520 1251 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 SEC31AO94979 1220 aaKnown RBP12.52□□□□□ -0.4
HDAC9-228ENST00000524023 RPN1P04843 607 aaKnown RBP12.52□□□□□ -0.4
HDAC9-228ENST00000524023 USP17L8P0C7I0 530 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 KCNQ4P56696 695 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 SPAG1Q07617 926 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 BARGINQ6ZT62 677 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 SMIM5Q71RC9 77 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 ATRIPQ8WXE1 791 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 RABGGTAQ92696 567 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 NYXQ9GZU5 481 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 KAT14Q9H8E8 782 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 SH3GLB2Q9NR46 395 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 RMND1Q9NWS8 449 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 MCM9Q9NXL9 1143 aa12.52□□□□□ -0.4
HDAC9-228ENST00000524023 COPB1P53618 953 aaKnown RBP12.52□□□□□ -0.41
HDAC9-228ENST00000524023 TFAP4Q01664 338 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 TCP11X2Q5H9J9 407 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 DGKHQ86XP1 1220 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 NELFBQ8WX92 580 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 GOLGA1Q92805 767 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 VPS16Q9H269 839 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 IL17RBQ9NRM6 502 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 PCDHA4Q9UN74 947 aa12.52□□□□□ -0.41
HDAC9-228ENST00000524023 CNTNAP4Q9C0A0 1308 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 KIF5CO60282 957 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 CDC25AP30304 524 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 TXLNAP40222 546 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 FAM193AP78312 1265 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 SLC4A8Q2Y0W8 1093 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 C12orf60Q5U649 245 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 CC2D1AQ6P1N0 951 aaPredicted RBP12.51□□□□□ -0.41
HDAC9-228ENST00000524023 TXNRD3Q86VQ6 643 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 TMTC1Q8IUR5 882 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 STAG2Q8N3U4 1231 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 PNMA1Q8ND90 353 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 GPKOWQ92917 476 aaPredicted RBP eCLIP12.51□□□□□ -0.41
HDAC9-228ENST00000524023 MKRN1Q9UHC7 482 aaKnown RBP12.51□□□□□ -0.41
HDAC9-228ENST00000524023 JAG2Q9Y219 1238 aa12.51□□□□□ -0.41
HDAC9-228ENST00000524023 KCNJ18B7U540 433 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 M0R2N6 131 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 KCNJ12Q14500 433 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 SPTY2D1Q68D10 685 aaPredicted RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 NBPF5PQ86XG9 351 aaPredicted RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 DZIP1Q86YF9 867 aaKnown RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 ANKRD20A12PQ8NF67 263 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 RASGRP4Q8TDF6 673 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 ANKS1AQ92625 1134 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 SETDB2Q96T68 719 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 PARD6BQ9BYG5 372 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 DISC1Q9NRI5 854 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 ABHD10Q9NUJ1 306 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 TAB2Q9NYJ8 693 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 NARFQ9UHQ1 456 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 TTF2Q9UNY4 1162 aaKnown RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 GDAQ9Y2T3 454 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 COL24A1Q17RW2 1714 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 IRS2Q9Y4H2 1338 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms