RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CCT2P78371 535 aaKnown RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 ZNF543Q08ER8 600 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 GRM1Q13255 1194 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 GRM4Q14833 912 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 FAM83BQ5T0W9 1011 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 GADL1Q6ZQY3 521 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 KCTD1Q719H9 257 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 STAG2Q8N3U4 1231 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 FANCBQ8NB91 859 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 SNX21Q969T3 373 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 MAP3K14Q99558 947 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 MAD2L2Q9UI95 211 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 LOC285556D6RIA3 1793 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 PARP1P09874 1014 aaKnown RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 BMP3P12645 472 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 CDC27P30260 824 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 CCDC96Q2M329 555 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 TREML2Q5T2D2 321 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 NECAB1Q8N987 351 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 PROCA1Q8NCQ7 364 aaPredicted RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 CTCFLQ8NI51 663 aaPredicted RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 NCOA5Q9HCD5 579 aaKnown RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 GPCPD1Q9NPB8 672 aa18.98■□□□□ 0.63
LSM1-204ENST00000522515 FAM217BQ9NTX9 383 aaPredicted RBP18.98■□□□□ 0.63
LSM1-204ENST00000522515 NID2Q14112 1375 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 CCL15-CCL14A0A0B4J2E2 113 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 PALM3A6NDB9 673 aaPredicted RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 WDR46O15213 610 aaKnown RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 PFKFB2O60825 505 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 CETPP11597 493 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 CCL15Q16663 113 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 BRI3BPQ8WY22 251 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 TMX3Q96JJ7 454 aa18.97■□□□□ 0.63
LSM1-204ENST00000522515 ZSCAN31Q96LW9 406 aaPredicted RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 SLKQ9H2G2 1235 aaPredicted RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 RPAP3Q9H6T3 665 aaPredicted RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 ISY1Q9ULR0 285 aaKnown RBP18.97■□□□□ 0.63
LSM1-204ENST00000522515 ADD1P35611 737 aaKnown RBP18.96■□□□□ 0.63
LSM1-204ENST00000522515 SCRN1Q12765 414 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 RTN1Q16799 776 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 ASPRV1Q53RT3 343 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 GPATCH4Q5T3I0 446 aaKnown RBP18.96■□□□□ 0.63
LSM1-204ENST00000522515 TTBK2Q6IQ55 1244 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 GPAT2Q6NUI2 795 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 FASTKD5Q7L8L6 764 aaKnown RBP18.96■□□□□ 0.63
LSM1-204ENST00000522515 CAPNS2Q96L46 248 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 ZIC5Q96T25 663 aa18.96■□□□□ 0.63
LSM1-204ENST00000522515 RBM19Q9Y4C8 960 aaKnown RBP18.96■□□□□ 0.63
LSM1-204ENST00000522515 TMEM232C9JQI7 657 aa18.95■□□□□ 0.62
LSM1-204ENST00000522515 KIF5BP33176 963 aa18.95■□□□□ 0.62
LSM1-204ENST00000522515 ST3GAL1Q11201 340 aa18.95■□□□□ 0.62
LSM1-204ENST00000522515 CMTR1Q8N1G2 835 aaKnown RBP18.95■□□□□ 0.62
LSM1-204ENST00000522515 CPVLQ9H3G5 476 aa18.95■□□□□ 0.62
LSM1-204ENST00000522515 SH2B1Q9NRF2 756 aaPredicted RBP18.95■□□□□ 0.62
LSM1-204ENST00000522515 MANSC4A6NHS7 340 aaPredicted RBP18.94■□□□□ 0.62
LSM1-204ENST00000522515 KLRF2D3W0D1 207 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 K7ELQ4 463 aaPredicted RBP18.94■□□□□ 0.62
LSM1-204ENST00000522515 PLEKHA8P1O95397 391 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 HSPA6P17066 643 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 NBPF11Q86T75 865 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 GTF3C6Q969F1 213 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 PTPN18Q99952 460 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 TANGO6Q9C0B7 1094 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 UBA5Q9GZZ9 404 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 FBXO28Q9NVF7 368 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 RBM28Q9NW13 759 aaKnown RBP18.94■□□□□ 0.62
LSM1-204ENST00000522515 AGTPBP1Q9UPW5 1226 aa18.94■□□□□ 0.62
LSM1-204ENST00000522515 TESPA1A2RU30 521 aaPredicted RBP18.93■□□□□ 0.62
LSM1-204ENST00000522515 SLC16A2P36021 539 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 PPP2R5BQ15173 497 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 CATSPERGQ6ZRH7 1159 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 CCDC83Q8IWF9 413 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 HSCBQ8IWL3 235 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 CCDC196A0A1B0GTZ2 297 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L15C9J2P7 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 BTBD19C9JJ37 291 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L13C9JLJ4 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L11C9JVI0 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L18D6R9N7 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L22D6RA61 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L17D6RBQ6 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L19D6RCP7 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L20D6RJB6 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 AOC2O75106 756 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 HOXA7P31268 230 aaPredicted RBP18.93■□□□□ 0.62
LSM1-204ENST00000522515 KIF23Q02241 960 aaPredicted RBP18.93■□□□□ 0.62
LSM1-204ENST00000522515 USP17L24Q0WX57 530 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 NOGQ13253 232 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 SLC35G1Q2M3R5 365 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 TMTC3Q6ZXV5 915 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 CCDC82Q8N4S0 544 aa18.93■□□□□ 0.62
LSM1-204ENST00000522515 SRBD1Q8N5C6 995 aaKnown RBP18.93■□□□□ 0.62
LSM1-204ENST00000522515 DTNBO60941 627 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 FLOT1O75955 427 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 VEGFBP49765 207 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 GNAQP50148 359 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 STAT2P52630 851 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 IKQ13123 557 aaPredicted RBP18.92■□□□□ 0.62
LSM1-204ENST00000522515 NTRK3Q16288 839 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 BTNL9Q6UXG8 535 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms