RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SPECC1LQ69YQ0 1117 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 C16orf86Q6ZW13 317 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 GRAMD1CQ8IYS0 662 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 ZNF710Q8N1W2 664 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 PPP1R13BQ96KQ4 1090 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 RMND1Q9NWS8 449 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 TRMT1Q9NXH9 659 aaKnown RBP16.87■□□□□ 0.29
NUP54-217ENST00000514987 MAD2L2Q9UI95 211 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 A0A087X0B3 334 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 CCDC194A0A1B0GVG4 234 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 PALM3A6NDB9 673 aaPredicted RBP16.86■□□□□ 0.29
NUP54-217ENST00000514987 ARHGAP6O43182 974 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 GTPBP6O43824 516 aaPredicted RBP16.86■□□□□ 0.29
NUP54-217ENST00000514987 RASA1P20936 1047 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 TEX11Q8IYF3 940 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 NEDD1Q8NHV4 660 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 ZNF592Q92610 1267 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 DYNLL2Q96FJ2 89 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 SPZ1Q9BXG8 430 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 SUGT1Q9Y2Z0 365 aa16.86■□□□□ 0.29
NUP54-217ENST00000514987 GOLGA6L9A6NEM1 432 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 AFMP43652 599 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 E2F4Q16254 413 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 SEPT12Q8IYM1 358 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 TMEM47Q9BQJ4 181 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 LRRC4BQ9NT99 713 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 BARHL2Q9NY43 387 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 CDK5RAP2Q96SN8 1893 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 DDX60LQ5H9U9 1706 aaKnown RBP16.85■□□□□ 0.29
NUP54-217ENST00000514987 GAKO14976 1311 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 AFF2P51816 1311 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 FAM205AQ6ZU69 1335 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 SYNRGQ9UMZ2 1314 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 KLRG2A4D1S0 409 aaPredicted RBP16.85■□□□□ 0.29
NUP54-217ENST00000514987 M0R2N6 131 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 MYL1P05976 194 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 MCM7P33993 719 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 CUL4BQ13620 913 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 FILIP1LQ4L180 1135 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 MAPKAPK5Q8IW41 473 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 C4orf32Q8N8J7 132 aa16.85■□□□□ 0.29
NUP54-217ENST00000514987 A0A1B0GTH6 734 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 USP17L3A6NCW0 530 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 USP17L4A6NCW7 530 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 TMEM232C9JQI7 657 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 WNT7AO00755 349 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 STX10O60499 249 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 PRPHP41219 470 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 CDK8P49336 464 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 ORC2Q13416 577 aaPredicted RBP16.84■□□□□ 0.29
NUP54-217ENST00000514987 NR1I3Q14994 352 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 ZNF827Q17R98 1081 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 NOM1Q5C9Z4 860 aaKnown RBP16.84■□□□□ 0.29
NUP54-217ENST00000514987 PDXDC2PQ6P474 469 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 DTHD1Q6ZMT9 781 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 USP17L1Q7RTZ2 530 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 STAG2Q8N3U4 1231 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 EYA3Q99504 573 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 CCDC94Q9BW85 323 aaPredicted RBP16.84■□□□□ 0.29
NUP54-217ENST00000514987 INTS13Q9NVM9 706 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 LRRC37AA6NMS7 1700 aa16.84■□□□□ 0.29
NUP54-217ENST00000514987 STXBP3O00186 592 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 SPAG1Q07617 926 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 GRIK5Q16478 980 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 CDKAL1Q5VV42 579 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 KRT25Q7Z3Z0 450 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 PDCL2Q8N4E4 241 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 TBC1D16Q8TBP0 767 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 ERO1AQ96HE7 468 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 GTPBP4Q9BZE4 634 aaKnown RBP16.83■□□□□ 0.28
NUP54-217ENST00000514987 SAP30BPQ9UHR5 308 aaKnown RBP16.83■□□□□ 0.28
NUP54-217ENST00000514987 STX8Q9UNK0 236 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 FLT1P17948 1338 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 PHLPP2Q6ZVD8 1323 aa16.83■□□□□ 0.28
NUP54-217ENST00000514987 PPP1R3GB7ZBB8 358 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 KLRF2D3W0D1 207 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 hCG_1984214I3L0E3 225 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 PARP1P09874 1014 aaKnown RBP16.82■□□□□ 0.28
NUP54-217ENST00000514987 GNA11P29992 359 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 NOVP48745 357 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 MFSD14BQ5SR56 506 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 WWC2Q6AWC2 1192 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 HEATR3Q7Z4Q2 680 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 SP8Q8IXZ3 490 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 TRMT44Q8IYL2 757 aaKnown RBP16.82■□□□□ 0.28
NUP54-217ENST00000514987 ZNF713Q8N859 430 aaPredicted RBP16.82■□□□□ 0.28
NUP54-217ENST00000514987 TSC1Q92574 1164 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 BAG1Q99933 345 aaPredicted RBP16.82■□□□□ 0.28
NUP54-217ENST00000514987 CGNQ9P2M7 1197 aaKnown RBP16.82■□□□□ 0.28
NUP54-217ENST00000514987 RWDD2AQ9UIY3 292 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 PCDHA6Q9UN73 950 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 PCDHA8Q9Y5H6 950 aa16.82■□□□□ 0.28
NUP54-217ENST00000514987 MYH1P12882 1939 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 FOCADQ5VW36 1801 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 SLU7O95391 586 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 RHBDL3P58872 404 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 ETF1P62495 437 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 NCBP1Q09161 790 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 HOMER1Q86YM7 354 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 ANKRD20A12PQ8NF67 263 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms