RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MBD3O95983 291 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 SLURP2P0DP57 97 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 HIRAP54198 1017 aaPredicted RBP18.44■□□□□ 0.54
NUP54-214ENST00000514307 NLRP5P59047 1200 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 TRAF1Q13077 416 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 CCDC96Q2M329 555 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 SULF1Q8IWU6 871 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 ZNF713Q8N859 430 aaPredicted RBP18.44■□□□□ 0.54
NUP54-214ENST00000514307 CCDC148Q8NFR7 591 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 SPATA32Q96LK8 384 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 VAT1LQ9HCJ6 419 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 GPCPD1Q9NPB8 672 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 TMX2Q9Y320 296 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 CNTNAP5Q8WYK1 1306 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 PHF20L1A8MW92 1017 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 RAD21O60216 631 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 RRP1BQ14684 758 aaKnown RBP18.43■□□□□ 0.54
NUP54-214ENST00000514307 NBPF12Q5TAG4 269 aaPredicted RBP18.43■□□□□ 0.54
NUP54-214ENST00000514307 PHF20Q9BVI0 1012 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 GGA3Q9NZ52 723 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 RCOR1Q9UKL0 485 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 CDK5RAP2Q96SN8 1893 aa18.43■□□□□ 0.54
NUP54-214ENST00000514307 KRT2P35908 639 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 UBE2HP62256 183 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 PNMA8AQ86V59 439 aaPredicted RBP18.42■□□□□ 0.54
NUP54-214ENST00000514307 NOSTRINQ8IVI9 506 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 DIS3L2Q8IYB7 885 aaKnown RBP18.42■□□□□ 0.54
NUP54-214ENST00000514307 UBA5Q9GZZ9 404 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 ZNF112Q9UJU3 913 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 ISY1Q9ULR0 285 aaKnown RBP18.42■□□□□ 0.54
NUP54-214ENST00000514307 KCNJ14Q9UNX9 436 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 ASTN2O75129 1339 aaPredicted RBP18.42■□□□□ 0.54
NUP54-214ENST00000514307 ELP1O95163 1332 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 ADAMTSL1Q8N6G6 1762 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 ECM29Q5VYK3 1845 aa18.42■□□□□ 0.54
NUP54-214ENST00000514307 PNMA6FA0A0J9YX94 578 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 BMP3P12645 472 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 EPHX2P34913 555 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 JAG1P78504 1218 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 KLHL40Q2TBA0 621 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 CLEC10AQ8IUN9 316 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 CHURC1Q8WUH1 139 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 PIBF1Q8WXW3 757 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 AS3MTQ9HBK9 375 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 C6orf50Q9HD87 102 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 PICK1Q9NRD5 415 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 GJB4Q9NTQ9 266 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 BARHL2Q9NY43 387 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 RTEL1Q9NZ71 1219 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 VPS54Q9P1Q0 977 aa18.41■□□□□ 0.54
NUP54-214ENST00000514307 hCG_1642624A0A1W2PR95 340 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 BTBD18B2RXH4 712 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 FIBPO43427 364 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 CYTH3O43739 400 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 GNA11P29992 359 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 SF3A1Q15459 793 aaKnown RBP18.4■□□□□ 0.54
NUP54-214ENST00000514307 RILPL1Q5EBL4 403 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 MYSM1Q5VVJ2 828 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 FAM173BQ6P4H8 233 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 HEATR3Q7Z4Q2 680 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 ADGRF4Q8IZF3 695 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 BICD2Q8TD16 824 aa18.4■□□□□ 0.54
NUP54-214ENST00000514307 NOL7Q9UMY1 257 aaKnown RBP18.4■□□□□ 0.54
NUP54-214ENST00000514307 FRMPD2Q68DX3 1309 aaPredicted RBP18.4■□□□□ 0.54
NUP54-214ENST00000514307 PPP1R12BO60237 982 aaPredicted RBP18.39■□□□□ 0.53
NUP54-214ENST00000514307 NDUFB10O96000 172 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 NF2P35240 595 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 KCTD1Q719H9 257 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 CDAN1Q8IWY9 1227 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 LEO1Q8WVC0 666 aaPredicted RBP18.39■□□□□ 0.53
NUP54-214ENST00000514307 PIGSQ96S52 555 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 GLT8D2Q9H1C3 349 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 JMJD4Q9H9V9 463 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 CEP131Q9UPN4 1083 aa18.39■□□□□ 0.53
NUP54-214ENST00000514307 UBE2Q2LH0YL09 131 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 PLA2G6O60733 806 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 YEATS4O95619 227 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 USP14P54578 494 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 IKQ13123 557 aaPredicted RBP18.38■□□□□ 0.53
NUP54-214ENST00000514307 BTNL9Q6UXG8 535 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 SCYL3Q8IZE3 742 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 BLIDQ8IZY5 108 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 JMYQ8N9B5 988 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 SYAP1Q96A49 352 aaPredicted RBP18.38■□□□□ 0.53
NUP54-214ENST00000514307 VCPKMTQ9H867 229 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 GDPD2Q9HCC8 539 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 POLR3EQ9NVU0 708 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 PCDHA4Q9UN74 947 aa18.38■□□□□ 0.53
NUP54-214ENST00000514307 SCAF8Q9UPN6 1271 aaKnown RBP18.38■□□□□ 0.53
NUP54-214ENST00000514307 A0A1W2PRG0 241 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 TMEM232C9JQI7 657 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 ZBTB5O15062 677 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 NAPAP54920 295 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 STK38Q15208 465 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 SHROOM1Q2M3G4 852 aaPredicted RBP18.37■□□□□ 0.53
NUP54-214ENST00000514307 ANO1Q5XXA6 986 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 TTBK2Q6IQ55 1244 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 KRT26Q7Z3Y9 468 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 FAM160B2Q86V87 743 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 HOMER1Q86YM7 354 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms